ga4gh/vrs

Issues

• Revise Haplotype model and add DerivativeMolecule

  #481 opened 3 months ago by ahwagner
  1

• VRS 2.0 Documentation Update

  #480 opened 3 months ago by ahwagner
  1

• Should SequenceReference be a Ga4ghIdentifiableObject?

  #479 opened 2 months ago by Mrinal-Thomas-Epic
  1

• Admixture values in CopyNumberCount and other forms of variation

  #445 opened 2 months ago by Mrinal-Thomas-Epic
  3

• Sequence characteristic metadata

  #431 opened 2 months ago by ahwagner
  4

• Create schema-level constraint for start/stop on SequenceLocation within Adjacencies

  #474 opened 4 months ago by Mrinal-Thomas-Epic
  2

• Tooling for converting between LSE and RSE representations of an allele

  #417 opened 3 months ago by Mrinal-Thomas-Epic
  2

• Sphinx update

  #388 opened 4 months ago by ahwagner
  2

• Policy on using Adjacencies or Allele representations

  #453 opened 4 months ago by ahwagner
  3

• Clarification on reference allele normalization policy

  #468 opened 4 months ago by Mrinal-Thomas-Epic
  1

• Question about Adjacencies & Inversion

  #469 opened 4 months ago by greg-sharpe
  6

• Normalisation

  #423 opened 4 months ago by d-cameron
  6

• 2.0 alpha SV issues/clarifications

  #449 opened 7 months ago by d-cameron
  2

• ReferenceLengthExpression: Documentation

  #426 opened a year ago by larrybabb
  5

• VRS digest serialization and SequenceReference

  #464 opened 5 months ago by ahwagner
  0

• Consider change to hashing algorithm for digest

  #460 opened 5 months ago by tnavatar
  9

• Copy Number Count text and json example do not match

  #437 opened 5 months ago by korikuzma
  3

• Validation errors with ga4gh.vrs==2.0.0a2

  #458 opened 5 months ago by bwalsh
  1

• Moving to a generic TextConcept entity

  #395 opened 6 months ago by ahwagner
  5

• SV-VRS wave 1 discussion: minimal representation

  #425 opened a year ago by d-cameron
  2

• Inconsistent genotype.count definitions

  #424 opened a year ago by d-cameron
  1

• PGx SV examples

  #415 opened a year ago by ahwagner
  1

• review documentation for new classes

  #403 opened 2 years ago by ahwagner
  1

• Update digest serialization rules in docs

  #410 opened 2 years ago by korikuzma
  14

• Confusing text in sha512t24u description

  #386 opened 2 years ago by jmarshall
  2

• Rename `sequenceTerminals` to `adjoinedSequences` in the new Adjacency class in 2.0

  #456 opened 6 months ago by larrybabb
  6

• Begin 2.0-alpha RTD reorg

  #452 opened 7 months ago by larrybabb
  0

• RTD build failing - requires config update

  #450 opened 7 months ago by larrybabb
  0

• Ambiguous interpretation of variants when combining multiple reference sequence versions

  #427 opened 7 months ago by d-cameron
  2

• SV VRS Wave 1: Ambiguity due to intrinsic sequence-based homology

  #429 opened a year ago by Mrinal-Thomas-Epic
  2

• What is Location class used for?

  #433 opened 7 months ago by Mrinal-Thomas-Epic
  2

• Need "start" position in RLE

  #436 opened 7 months ago by larrybabb
  1

• update to correct keys

  #435 opened 9 months ago by ahwagner
  1

• Fix SequenceLocation ga4ghDigest.keys

  #443 opened 10 months ago by korikuzma
  1

• `sequence` in Sequence Location and LSE/RLE is confusing

  #440 opened 10 months ago by korikuzma
  6

• Update models.yaml

  #405 opened 10 months ago by korikuzma
  2

• Use camel case for field names

  #432 opened 10 months ago by korikuzma
  0

• Make RLE subsequence length required

  #430 opened a year ago by ahwagner
  0

• SV SIG – Variant calling benchmarking use case

  #422 opened a year ago by Rapsssito
  3

• Incorporate 1.3 CNV changes in metaschema-update

  #420 opened a year ago by korikuzma
  1

• CopyNumber: Naming and Semantics

  #404 opened a year ago by rrfreimuth
  26

• Add `ComposedSequenceExpression` tests

  #408 opened a year ago by korikuzma
  0

• Improve test model validation

  #406 opened a year ago by korikuzma
  0

• indicating sort behavior across VRS classes

  #411 opened 2 years ago by ahwagner
  4

• Draft Genotype model proposal from hackathon

  #393 opened 2 years ago by larrybabb
  0

• Deprecate CopyNumber

  #396 opened 2 years ago by ahwagner
  3

• Create a GenotypeMembers anchor

  #397 opened 2 years ago by ahwagner
  0

• Feedback on #394

  #401 opened 2 years ago by ahwagner
  1

• Make a better term for Genotype.count

  #398 opened 2 years ago by ahwagner
  9

• Add `default` value for `type` attribute

  #389 opened 2 years ago by korikuzma
  1