Pinned Repositories
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
benchmarking-sv-callers-paper
Updated figures for "A benchmarking of WGS-based structural variant callers" paper
bioconda-recipes
Conda recipes for the bioconda channel.
biodaniel
ABACBS workshop example project
biodemo
biodemopython
gridss
GRIDSS: the Genomic Rearrangement IDentification Software Suite
StructuralVariantAnnotation
R package designed to simplify structural variant analysis
sv_benchmark
Comprehensive benchmark of structural variant callers
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
d-cameron's Repositories
d-cameron/biodemo
d-cameron/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
d-cameron/benchmarking-sv-callers-paper
Updated figures for "A benchmarking of WGS-based structural variant callers" paper
d-cameron/bioconda-recipes
Conda recipes for the bioconda channel.
d-cameron/biodaniel
ABACBS workshop example project
d-cameron/biodemopython
d-cameron/block-aligner
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
d-cameron/COLO829_somaticSV
Scripts and files used in the generation of the COLO829 somatic SV truthset.
d-cameron/fastq_dedup_ec
Utility to perform error-correcting deduplication.
d-cameron/fmaps
d-cameron/fmaps90
d-cameron/fmaps_265h_completed
SeaBlock marathon run complete (0.17)
d-cameron/haplotype_reinterpretation
d-cameron/hgsvc_benchmark
d-cameron/hmftools
Various utility tools for working with genomics data
d-cameron/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
d-cameron/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
d-cameron/invitro_hiv_analysis_pipeline
d-cameron/kraken2
The second version of the Kraken taxonomic sequence classification system
d-cameron/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
d-cameron/primer_design_package
d-cameron/read_analyser
Read structure analyser for short read sequencing data
d-cameron/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
d-cameron/scambly
d-cameron/scripts
d-cameron/svqsc
Structural Variation Quality Score Calculator
d-cameron/swagg
d-cameron/ThousandVariantCallersRepo
Thousand Variant Callers Project Github Repo
d-cameron/VariantAnnotation
Annotation of Genetic Variants
d-cameron/vrs
Extensible specification for representing and uniquely identifying biological sequence variation