PapenfussLab/StructuralVariantAnnotation

Issues

• could not find function ".assertValidBreakpointGRanges"

  #44 opened 10 months ago by selmapichot
  2

• Subset by multiple seqnames

  #43 opened a year ago by nuttynutmore
  3

• Version compatible with R 3.6?

  #42 opened 2 years ago by pauline-ng
  2

• Preserving Info Fields with breakpointgr2bedpe()

  #41 opened 2 years ago by blex-max
  1

• Bioconductor Forum Not Monitored

  #40 opened 3 years ago by DarioS
  1

• manta somaticSV.vcf as input for StruturalVariantAnnotation

  #39 opened 3 years ago by brewert2
  1

• Use SVLEN not END

  #38 opened 3 years ago by d-cameron
  0

• Use ALT field instead of SVTYPE for determining symbolic allele type

  #37 opened 3 years ago by d-cameron
  0

• Add support for LongRanger UNK and IMPRECISE_DIR

  #36 opened 3 years ago by d-cameron
  0

• This package only takes BND notation vcf ?

  #34 opened 3 years ago by yangyxt
  4

• Interpretation error for breakend records with SVTYPE!=BND

  #35 opened 4 years ago by d-cameron
  0

• Retrotransposed Transcripts and Mitochondrial Fusions Functions Missing from Bioconductor Download

  #32 opened 4 years ago by DarioS
  4

• How to use single breakend to increase detection sensitivity for insertions

  #33 opened 4 years ago by tgong1
  2

• GRanges 'vcfid' and multisample VCF input

  #31 opened 4 years ago by brucemoran
  4

• License

  #30 opened 4 years ago by cbrueffer
  0

• <CNV> not supported

  #25 opened 5 years ago by d-cameron
  0

• Merging SVs

  #29 opened 4 years ago by gdeoli
  1

• Missing %na% function in Bioconductor release version

  #28 opened 5 years ago by roelj
  2

• Error: nrow of `region1` and `region2` differ.

  #27 opened 5 years ago by adbeggs
  1

• Manta VCF: error in drawing circos plot

  #24 opened 5 years ago by TendoLiu
  1

• Error loading vcf with some SV types

  #26 opened 5 years ago by cboursnell
  1

• Add more vignette examples explaining `findBreakpointOverlaps()` parameters.

  #23 opened 5 years ago by oalavijeh
  3

• Unrecognised format for variants in CHM Huddleston2016 truth sets

  #20 opened 5 years ago by lsantuari
  4

• annotate the output of GRIDSS with SVLEN and SVTYPE

  #19 opened 5 years ago by Fred-07
  5

• Getting this annotation for manta .vcf

  #17 opened 6 years ago by beginner984
  3

• unpack names unpacked columns incorrectly when dropping column

  #1 opened 6 years ago by d-cameron
  1

• BreakpointGRanges.R function name clash

  #3 opened 6 years ago by d-cameron
  0

• Packaged

  #7 opened 6 years ago by lachlansimpson
  2

• Sample Names not given in simplebed file

  #10 opened 6 years ago by nikitagambhir
  3

• Biologically Annotate Insertions

  #12 opened 6 years ago by DarioS
  4

• Getting duplicated error

  #18 opened 6 years ago by beginner984
  1

• Extracting this information from .vcf file

  #14 opened 6 years ago by beginner984
  6

• %na% Missing During Test

  #15 opened 6 years ago by DarioS
  1

• Installation error related to R version

  #16 opened 6 years ago by tgong1
  1

• ̦Problem extracting partner QUAL score from breakpointRange

  #11 opened 6 years ago by andrwb
  5

• What is the minimum length of a mutation that is annotated as a Structural Variant?

  #9 opened 6 years ago by nikitagambhir
  2

• Inversion custom attributes not handled for DELLY or manta

  #8 opened 6 years ago by d-cameron
  0

• Extend unpack caller support

  #2 opened 7 years ago by d-cameron
  0

• Easy way to make a long data frame of by-input category information

  #6 opened 7 years ago by l-d-s
  1

• Fix package for installation sanity

  #5 opened 8 years ago by lachlansimpson
  4

• Installation fails

  #4 opened 8 years ago by lachlansimpson
  0