Pinned Repositories
betterbam
BAM file parsing for Ruby using C++ Bamtools library
cm-sketch
Count Min Sketch implementation in Ruby
crb-blast
Conditional Reciprocal Best Blast
fix-trinity-output
Fix Trinity fastq output
i3install
scripts and configs for installing i3 in a fresh ubuntu17.04
preprocess
Ruby Gem for running preprocessing on Illumina sequence data
round-robin
Multiple sequence annotation
SOAPdenovo-Trans
A fork of SOAPdenovo-Trans
transfuse
Merge transcriptome assemblies
transrate-tools
Reading bam files and aggregating read mapping information about sequences
cboursnell's Repositories
cboursnell/crb-blast
Conditional Reciprocal Best Blast
cboursnell/transfuse
Merge transcriptome assemblies
cboursnell/SOAPdenovo-Trans
A fork of SOAPdenovo-Trans
cboursnell/transrate-tools
Reading bam files and aggregating read mapping information about sequences
cboursnell/preprocess
Ruby Gem for running preprocessing on Illumina sequence data
cboursnell/i3install
scripts and configs for installing i3 in a fresh ubuntu17.04
cboursnell/betterbam
BAM file parsing for Ruby using C++ Bamtools library
cboursnell/fix-trinity-output
Fix Trinity fastq output
cboursnell/assemblotron
Automated optimisation of de-novo transcriptome assembly
cboursnell/bindeps
Binary dependency management for Ruby
cboursnell/carpel
Bayesian segmentation Ruby gem
cboursnell/cboursnell.github.io
Randomiser for Dominion cards
cboursnell/clustemble
A preparation for nucleotide sequence consensus in transfuse
cboursnell/deconstructSigs
deconstructSigs
cboursnell/dominiontabs
Divider generator for the card game Dominion and its expansions.
cboursnell/dotfiles
A collection of config files for Crunchbang Linux
cboursnell/fixpairing
Simple tool to fix paired fastq files
cboursnell/gridss-purple-linx
Standalone GRIDSS/PURPLE/LINX pipeline
cboursnell/magicwildrice
cboursnell/petdba
Paired End Transcriptomic De Bruijn graph assembler
cboursnell/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
cboursnell/RapClust
Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
cboursnell/Rcorrector
Error correction for Illumina RNA-seq reads
cboursnell/ruby-drawille
Draw in your terminal with Unicode Braille characters.
cboursnell/ruby_c_ext_test
Test of writing a C extension for Ruby
cboursnell/snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
cboursnell/transfix-paper
Paper and analysis for transfix: improving your transcriptome assembly
cboursnell/transonerate
Ruby gem for assessment of assembly quality by aligning to a genome with exonerate
cboursnell/transrate
Quality assessment and comparison of transcriptome assemblies
cboursnell/transrate-paper
Paper for transrate