Pinned Repositories
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
biopython
Official git repository for Biopython (originally converted from CVS)
misc_bioinf
Repository for miscellaneous bioinformatics scripts that may be useful to others.
MutationExplorer
R Shiny based lightweight mutation exploration tool
pep8-git-hook
Git pre-commit hook that checks for Python PEP8 style compliance.
snakemake-aws-parallelcluster-slurm
Snakemake profile for running on AWS ParallelCluster with the Slurm scheduler
tophat-recondition
Post-processor for TopHat unmapped.bam files making them usable by downstream software.
freebsd-src
The FreeBSD src tree publish-only repository. Experimenting with 'simple' pull requests....
snake-chic
Snakemake wrapper around the Arima Capture Hi-C (CHiC) workflow
openbsm
OpenBSM open audit implementation
cbrueffer's Repositories
cbrueffer/snakemake-aws-parallelcluster-slurm
Snakemake profile for running on AWS ParallelCluster with the Slurm scheduler
cbrueffer/cbrueffer.github.io
Personal website.
cbrueffer/phd_thesis
LaTeX sources for my PhD thesis RNA Sequencing for Molecular Diagnostics in Breast Cancer at the Lund University Faculty of Medicine (published December 2020).
cbrueffer/bedtools2
A powerful toolset for genome arithmetic.
cbrueffer/bioconda-utils
Utilities for building and managing bioconda recipes
cbrueffer/biopython
Fork of the official biopython repository.
cbrueffer/bowtie2
A fast and sensitive gapped read aligner
cbrueffer/cbrueffer
cbrueffer Github README
cbrueffer/checkQC
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
cbrueffer/circlize
Circular visualization in R
cbrueffer/Complete-Striped-Smith-Waterman-Library
cbrueffer/conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
cbrueffer/conda_r_skeleton_helper
Cleaning up Conda r-packages
cbrueffer/covid19-review
A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19
cbrueffer/docs
OPNsense documentation
cbrueffer/dotfiles
Dot files
cbrueffer/fitter
Fit data to many distributions
cbrueffer/leviosam2
Fast and accurate coordinate conversion between assemblies
cbrueffer/plugins
OPNsense plugin collection
cbrueffer/r-feedstock
A conda-smithy repository for r.
cbrueffer/r-nanonext-feedstock
A conda-smithy repository for r-nanonext.
cbrueffer/r-spdata-feedstock
A conda-smithy repository for r-spdata.
cbrueffer/seqPanther
Variant Caller and Patcher
cbrueffer/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
cbrueffer/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
cbrueffer/tidyomicsBlog
the manifesto, workshops and tutorials of the tidy transcriptomics
cbrueffer/tidySummarizedExperiment
Brings SummarizedExperiment to tidiverse with no side-effects
cbrueffer/tnverify
cbrueffer/vegclust
Package designed to assist analyses of vegetation structure and composition. It is intended to be useful for community ecologists and forest engineers, but the clustering functions can be used in other fields.
cbrueffer/wowchemy-hugo-themes
📝 The website builder for Hugo. Build and deploy a beautiful website in minutes!