Pinned Repositories
batch_somatic
NextFlow/Singularity based pipeline to process DNA NGS data
endometrium_normal
METABRIC_survival
Survival analysis using Cox PH on METABRIC data
NRPB_methylation_annotation
RNAseq_kallisto
RNAseq with Kallisto
RNAseqon
R functions for use with RNAseq downstream analysis
somatic_n-of-1
Somatic-Germline n-of-1 DNAseq Analysis
somenone
Somatic n-of-1 NextFlow pipeline R package
TCGA_MAF_GeneList-vs-Random
TumorType-WGS
Classifying tumor types based on Whole Genome Sequencing (WGS) data
brucemoran's Repositories
brucemoran/TumorType-WGS
Classifying tumor types based on Whole Genome Sequencing (WGS) data
brucemoran/RNAseqon
R functions for use with RNAseq downstream analysis
brucemoran/RNAseq_kallisto
RNAseq with Kallisto
brucemoran/somatic_n-of-1
Somatic-Germline n-of-1 DNAseq Analysis
brucemoran/somenone
Somatic n-of-1 NextFlow pipeline R package
brucemoran/baRcodeR
Labeling, tracking, and organizing samples with 2D barcodes
brucemoran/bd2han_validation
brucemoran/brucemoran.github.io
https://brucemoran.github.io
brucemoran/charmon_tcga
https://brucemoran.github.io/charmon_tcga
brucemoran/cnormileGlaucoma
What the Package Does (Title Case)
brucemoran/configs
Config files used to define parameters specific to compute environments at different Institutions
brucemoran/containers
Bioinformatics containers
brucemoran/ebrennan_haosmc
brucemoran/EGAsubmit
Nextflow for European Genome-phenome Archive Submission
brucemoran/FFPEsig
Codes and Data for FFPEsig manuscript
brucemoran/fillOutCMD
Fill out CMD PDF form and save to CSV
brucemoran/MANEline
A Nextflow pipeline to use MANE annotations with GRCh37 and optional BED files.
brucemoran/nf-pcgr
brucemoran/nfcore_download_singularity
nf-core tools doesn't download Singularity images properly ATOW
brucemoran/NVB1fillout
Fill out NVB1 forms from CSV
brucemoran/NVB1shiny
Fillout NVB1 form automation
brucemoran/parsePcgrCpsr
Parsing of JSON files from PCGR, CPSR
brucemoran/perl
Repo for utility Perl scripts
brucemoran/R-IQ-OQ
R-IQ-OQ is an R/Sweave based program designed to serve as a foundation for the Installation Qualification (IQ) and Operational Qualification (OQ) of R (http://www.r-project.org/) when used in environments (such as regulated clinical trials) where such processes may be required.
brucemoran/sbatch_nxf_creator
brucemoran/shinySetupPostgreSQL
Shiny app to set up a PostgreSQL table in a database from user input of XLSX files
brucemoran/Singularity
Singularity recipes
brucemoran/staplr
PDF Toolkit. :paperclip: :hammer: :wrench: :scissors: :bookmark_tabs: :file_folder::paperclip: :bookmark: :construction: :construction_worker:
brucemoran/testPostgreSQLRelations
testPostgreSQLRelations
brucemoran/tumour_only
Tumour-only DNA sequencing analysis