brucemoran

Bioinformatics and Cancer Genomics

St. Vincent's University HospitalDublin, Ireland

Pinned Repositories

batch_somatic
NextFlow/Singularity based pipeline to process DNA NGS data
Language:Nextflow2 2 01
endometrium_normal
Language:R1 3 00
METABRIC_survival
Survival analysis using Cox PH on METABRIC data
Language:R1 2 00
NRPB_methylation_annotation
Language:Shell1 2 02
RNAseq_kallisto
RNAseq with Kallisto
Language:Nextflow0 2 00
RNAseqon
R functions for use with RNAseq downstream analysis
Language:R2 2 00
somatic_n-of-1
Somatic-Germline n-of-1 DNAseq Analysis
Language:Nextflow0 2 00
somenone
Somatic n-of-1 NextFlow pipeline R package
Language:R0 2 00
TCGA_MAF_GeneList-vs-Random
Language:R1 2 01
TumorType-WGS
Classifying tumor types based on Whole Genome Sequencing (WGS) data
Language:Python4 1 00

brucemoran's Repositories

brucemoran/METABRIC_survival
Survival analysis using Cox PH on METABRIC data
Language:R1 2 00
brucemoran/NRPB_methylation_annotation
Language:Shell1 2 02
brucemoran/Bovine_DNA_RNA
Language:Nextflow
brucemoran/exome_HLA
Calling HLA from exome data with HLAminer in Singularity
Language:Nextflow
brucemoran/gintools
[Dev] Tools for genomic DNA integration analysis
Language:R
brucemoran/HLAminer
HLAminer environment containerized for singularity
Language:Shell
brucemoran/limma
Linear Models for Microarray Data
Language:R
brucemoran/LncPipeReporter
An R package for automatically aggregating and summarizing lncRNA analysis results.
Language:R1 0
brucemoran/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:Python2 0
brucemoran/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
Language:HTML2 0