genomic-intervals

There are 11 repositories under genomic-intervals topic.

open2c/bioframe
Genomic interval operations on Pandas DataFrames
Language:Python183 10 10937
biodatageeks/polars-bio
Blazing-Fast Bioinformatic Operations on Python DataFrames
Language:Python46 2 361
databio/geniml
Genomic interval machine learning
Language:Python18 7 42
databio/bedshift
Bedfile perturbation tool
Language:Python17 15 223
databio/IGD
A high-performance search engine for large-scale genomic interval datasets
Language:C17 14 274
databio/bedbase
Aggregate, analyze, and serve genomic regions.
Language:Jupyter Notebook4 7 51
databio/bedms
Tool for standardization of genomics/epigenomics metadata
Language:Python3 17 120
databio/bbconf
Configuration package for bedbase project
Language:Python1 10 392
databio/bedboss
Python pipeline for processing BED files for BEDbase
Language:Python1 2 70
databio/bedhost
API and UI for BEDbase
Language:TypeScript1 9 1031
ngualand/ProOvErlap
ProOvErlap - Assessing feature proximity/overlap and testing statistical significance from genomic intervals
Language:Python00