epigen/enrichment_analysis

Issues

• download resources helper script

  #24 opened 3 months ago by sreichl
  0

• release v1.0.0

  #23 opened 5 months ago by sreichl
  0

• TFBS/motif enrichment analysis

  #11 opened 5 months ago by sreichl
  5

• PPI analysis using STRING R package

  #12 opened 5 months ago by sreichl
  1

• user-defined database support for LOLA

  #10 opened 6 months ago by sreichl
  0

• investigate preranked GSEApy behaviour for +/-Inf scores

  #19 opened 6 months ago by sreichl
  1

• Custom sample order in summary plots

  #8 opened 6 months ago by dariarom94
  1

• fix group summary dot plot

  #22 opened 6 months ago by sreichl
  0

• update and document all packages to latest version

  #1 opened 6 months ago by sreichl
  1

• Aggregate/visualize not working (because of empty output?)

  #18 opened 6 months ago by Rubbert
  1

• GREAT issues

  #20 opened 6 months ago by sreichl
  1

• user-defined database support for GREAT

  #21 opened 6 months ago by sreichl
  0

• enhanced visualization considering hierarchical nature of enrichment terms

  #13 opened 6 months ago by sreichl
  1

• include clusterProfiler ecosystem

  #14 opened 6 months ago by sreichl
  1

• include g:profiler from Elixier

  #9 opened 6 months ago by sreichl
  1

• include decoupleR

  #15 opened 6 months ago by sreichl
  1

• add GSVA (supported by latest GSEApy)

  #16 opened 6 months ago by sreichl
  1

• Enrichment analysis result visualisation using volcano plots (significance by effect-size)

  #17 opened 6 months ago by sreichl
  1

• raise KeyError(key) from err KeyError: 'qValue' Error in rule aggregate:

  #7 opened a year ago by sandragold
  6

• Error in rule gene_ORA_GSEApy: jobid: 31, raise ValueError("No objects to concatenate")

  #6 opened a year ago by sandragold
  2

• The results are not generating

  #4 opened 2 years ago by sandragold
  3

• User provided databases

  #2 opened 2 years ago by sreichl
  0

• complete documentation

  #3 opened 2 years ago by sreichl
  0