gene-set-enrichment
There are 26 repositories under gene-set-enrichment topic.
tanghaibao/goatools
Python library to handle Gene Ontology (GO) terms
rcastelo/GSVA
Gene set variation analysis
theislab/diffxpy
Differential expression analysis for single-cell RNA-seq data.
epigen/enrichment_analysis
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
genescf/GeneSCF
Gene Set Clustering based on Functional annotation
KwatMDPhD/GSEA.jl
The official command-line program for gene-set-enrichment analysis (GSEA) 🏔️
Acare/hacksig
A Tidy Framework to Hack Gene Expression Signatures
krassowski/gsea-api
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
ELTEbioinformatics/mulea
mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
varemo/piano
piano - An R/Bioconductor package for gene set analysis
NKI-CCB/flexgsea-r
Flexible gene set enrichment analysis
malhamdoosh/EGSEA
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
euxhenh/grinch
A library for differential expression and gene set enrichment analysis based on hydra and pydantic.
aedanr/PhD-Project-2.4
Assessing dIfferential expression, dispersion, distribution analyses on TCGA tumour-normal RNA-seq datasets
asusete/askoR
AskoR pipeline: analysis of gene expression data, using edgeR.
bio2bel/msig
Integration of pathway-related information from MSigDB in BEL
fcomitani/tapir
Transcriptiome Analysis in Python Imported from R
KatrionaGoldmann/omicAnnotations
Package to gather gene information, annotations, and functions
kn-bibs/pathways-analysis
Testing, development environment for a new project of KN BIBS
sartorlab/chipenrich.data
Experimental version of data package associated with chipenrich
DBRetina/DBRetina
DBRetina python package
dpohanlon/brioche
Bayesian tests for set enrichment :bread:
ELTEbioinformatics/GMT_files_for_mulea
GMT files for the mulea R package
NicolasH2/gseaCondenser
condense GSEA terms
ok-gitr/geneSetVis
gene-set enrichment visualization.