jdwinkler-lanzatech

Pinned Repositories

• gRodon2

  Language:R403134

• StrainFLAIR

  Strain-level abundances estimation in metagenomic samples using variation graphs

  Language:Python25485

• minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.9k861.1k424

• StrainScan

  High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers

  Language:Python404225

• MashMap

  A fast approximate aligner for long DNA sequences

  Language:C++275175039

• brendapy

  BRENDA parser in python

  Language:Python215536

• SibeliaZ

  A fast whole-genome aligner based on de Bruijn graphs

  Language:C++14274919

• drep

  Rapid comparison and dereplication of genomes

  Language:Python272823238

• genome_updater

  Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

  Language:Shell14614315

jdwinkler-lanzatech's Repositories