liaoherui/StrainScan

Issues

• strainscan_build stuck after processing a cluster

  #22 opened 5 months ago by enzovalentino
  6

• How to create custom databases

  #11 opened a year ago by NamenloseHeldin
  19

• use a custom database to identify strains give IndexError: list index out of range

  #21 opened 9 months ago by wsyjh
  3

• 数据库构建 killed

  #20 opened 10 months ago by wll4213
  2

• Genomes used to build the database

  #19 opened a year ago by Wenhai-Zhang
  1

• How to infer different species-level abundances based on strain-level abundances

  #17 opened a year ago by xujialupaoli
  5

• Issue with StrainScan_build during database construction

  #18 opened a year ago by BZhao95
  1

• Error in building a custom database

  #16 opened a year ago by sahilrishav2
  6

• IndexError: list index out of range

  #13 opened a year ago by wangqi0000
  9

• ZeroDivisionError: division by zero

  #15 opened a year ago by rafalkolenda
  4

• 构建本地数据库报错

  #14 opened a year ago by lisa4109
  3

• Build custom database use too much memory

  #12 opened a year ago by wsyjh
  1

• unrecognized arguments: -j (v. 1.0.10)

  #8 opened a year ago by gazollavolpiano
  1

• Error for the usage of parameter "-b"

  #9 opened a year ago by wangqi0000
  1

• How to create custom databases

  #10 opened a year ago by mradz19
  27

• How to compare sequencing depth between different samples

  #7 opened 2 years ago by flashton2003
  3

• Output explanation - different total kmers and relationship between depth and coverage

  #6 opened 2 years ago by flashton2003
  3

• system calls: not report on errors

  #3 opened 2 years ago by nick-youngblut
  2

• paired-end, interleaved, or just read1?

  #2 opened 2 years ago by nick-youngblut
  5

• Bugs with database construction, strain scanning

  #1 opened 2 years ago by jdwinkler-lanzatech
  2