Pinned Repositories
AnnoSINE_v2
Accelerating de novo SINE annotation in plant and animal genomes
GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
GraphV
GraphV - An RNA virus strain-level identification tool using long reads and genome graph.
MetaComp
MAEP(Metagenomics Assembly Evaluation Pipeline). This pipeline is a new version of LAEP.
MSV-Python
宏基因数据统计可视化自动分析流程(Metagenomics Stat and Visual)
StrainAMR
A learning-based tool to predict antimicrobial resistance and identify AMR-related genomic features from bacterial strain genomes
StrainDetect
StrainDetect is an online viral strain-level analysis tool based on VirStrain.
StrainKmer
StrainKmer- an efficient and user-friendly tool for extracting viral strains' k-mers from raw sequencing data
StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
VirStrain
An RNA virus strain-level identification tool for short reads.
liaoherui's Repositories
liaoherui/StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
liaoherui/VirStrain
An RNA virus strain-level identification tool for short reads.
liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
liaoherui/MetaComp
MAEP(Metagenomics Assembly Evaluation Pipeline). This pipeline is a new version of LAEP.
liaoherui/AnnoSINE_v2
Accelerating de novo SINE annotation in plant and animal genomes
liaoherui/StrainKmer
StrainKmer- an efficient and user-friendly tool for extracting viral strains' k-mers from raw sequencing data
liaoherui/GraphV
GraphV - An RNA virus strain-level identification tool using long reads and genome graph.
liaoherui/StrainDetect
StrainDetect is an online viral strain-level analysis tool based on VirStrain.
liaoherui/bioconda-recipes
Conda recipes for the bioconda channel.
liaoherui/CHERRY
Host prediction
liaoherui/StrainAMR
A learning-based tool to predict antimicrobial resistance and identify AMR-related genomic features from bacterial strain genomes
liaoherui/flask-vue-microblog
liaoherui/flask_microblog
flask_microblog
liaoherui/GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
liaoherui/HOTSPOT
HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
liaoherui/IDMIL
IDMIL: An alignment-free interpretable deep multiple instance learning (MIL) for predicting disease from whole-metagenomic data
liaoherui/kraken2
The second version of the Kraken taxonomic sequence classification system
liaoherui/liaoherui.github.io
My blog - 2020 version
liaoherui/LRTK
A unified and versatile toolkit for analyzing Linked-Read sequencing data
liaoherui/PhaGCN
GCN classifier for phage taxanomy classification
liaoherui/PlantBind
A tool for predicting transcription factor binding sites in plants
liaoherui/PStrain
An Iterative Microbial Strains Profiling Algorithm for Shotgun Metagenomic Sequencing Data.
liaoherui/quast
Genome assembly evaluation tool
liaoherui/README
README文件语法解读，即Github Flavored Markdown语法介绍
liaoherui/RNA_virus_detector
VirBot: a protein-based RNA virus detector for metagenomic data
liaoherui/SibeliaZ
A fast whole-genome aligner based on de Bruijn graphs
liaoherui/StrainAnalyze
StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.
liaoherui/strainest
StrainEst - abundance estimation of strains
liaoherui/ToolsCommandLines
All command lines running tools in VirStrain paper.
liaoherui/WideVariant-DL
Precision evolutionary analysis of large intraspecies microbial data sets using a 2-step interactive pipeline