Pinned Repositories
AnnoSINE_v2
Accelerating de novo SINE annotation in plant and animal genomes
GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
GraphV
GraphV - An RNA virus strain-level identification tool using long reads and genome graph.
MetaComp
MAEP(Metagenomics Assembly Evaluation Pipeline). This pipeline is a new version of LAEP.
MSV-Python
宏基因数据统计可视化自动分析流程(Metagenomics Stat and Visual)
StrainAMR
A learning-based tool to predict antimicrobial resistance and identify AMR-related genomic features from bacterial strain genomes
StrainDetect
StrainDetect is an online viral strain-level analysis tool based on VirStrain.
StrainKmer
StrainKmer- an efficient and user-friendly tool for extracting viral strains' k-mers from raw sequencing data
StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
VirStrain
An RNA virus strain-level identification tool for short reads.
liaoherui's Repositories
liaoherui/MSV-Python
宏基因数据统计可视化自动分析流程(Metagenomics Stat and Visual)
liaoherui/AssemblyEvaluator
A simple tool for evaluating a metagenomic assembly
liaoherui/CMTW-python
宏基因数据转换为网站需求数据流程(Convert Metagenomics data to web data)
liaoherui/fastq_phred
Perl script for judge the fastq's encoding, whether it is phred33 or phred64.
liaoherui/Flye
Fast and accurate de novo assembler for single molecule sequencing reads
liaoherui/GenGraph
A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
liaoherui/LAEP-python
LAEP(linked-read assembly evaluation pipeline)
liaoherui/MAEP-Python
MAEP(Metagenomics Assebly Evaluation Pipeline).This pipeline is a new version of LAEP.
liaoherui/MAGpurify
Improvement of metagenome-assembled genomes
liaoherui/metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
liaoherui/NCBI-GenBank-file-parser
This program can be used to parse the NCBI GenBank file to create a tabulated csv file.
liaoherui/pavian
🌈 Interactive analysis of metagenomics data
liaoherui/science_flask
ScienceFlask: an open-source template for scientific web-app development