biological-data-analysis
There are 214 repositories under biological-data-analysis topic.
MaxValue/Terpene-Profile-Parser-for-Cannabis-Strains
Parser and database to index the terpene profile of different strains of Cannabis from online databases
opendilab/DI-bioseq
Decision Intelligence platform for Biological Sequence Searching
WhoIsJack/python-bioimage-analysis-tutorial
A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
lmb-freiburg/Unet-Segmentation
The U-Net Segmentation plugin for Fiji (ImageJ)
chriscainx/mnnpy
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
bobeobibo/phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
DevoLearn/devolearn
Accelerate data driven research on embryos with deep learning models :microscope:
Pex2892/PETAL
PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
SMRUCC/GCModeller
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
mmzdouc/FERMO
Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
BioJulia/BioSymbols.jl
Nucleic and amino acid primitive types
TillMacher/TaxonTableTools
TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
openvax/pepnet
Neural networks for amino acid sequences
pylattice/pyLattice
A python library for advanced lattice light-sheet image analysis
EnzoAndree/HmmPy
A Pure-Python parser of HMMER3 output
jdrudolph/photon
PHOsphoproteomic dissecTiOn using Networks
ace19-dev/2018-Data-Science-Bowl
Kaggle Competitions: Find the nuclei in divergent images to advance medical discovery
CBIIT/Misteli-Lab-CCR-NCI
Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.
mozanunal/digital-filtering-of-ecg-signal
Digital filtering of a ECG signal
vanvalenlab/deepcell-spots
Deep Learning Library for Spot Detection
debbiemarkslab/BEAR
This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"
HMS-IDAC/MLRFSwCF
Multi-Layer Random Forest, with Circularity Features, for Image Segmentation
KaunilD/mes2hb
Convert optical density data (red and infrared) from functional near infrared spectrope (fNIRS) to oxy, de-oxy haemoglobin concentrations using modified Beer-Lambert law.
amckenna41/protPy
Calculating a range of protein descriptors using their physicochemical, biological and structural properties 🔬.
psa-lab/siteinterlock
A toolkit for predicting the binding mode of small molecules interacting with proteins based on interfacial rigidification, as assessed by graph theoretic constraint counting on the covalent and noncovalent bond network. Raschka et al. (2016) Proteins: Structure, Function, and Bioinformatics
rethomics/ggetho
Visualise high throughput behavioural data in R, based on ggplot2
bjornmossa/cl-fasta-to-notes
Common lisp tool for DNA data sonification
e200/GenesDecypher
A genetic decypher written in C. A school work of a student at Universidade Metodista de Angola.
HMS-IDAC/MLRFS
Multi-Layer Random Forest [for Image] Segmentation
Kannank97/Deep_Learning-Biological_Networks
Node Classification on Biological networks using Deep learning
santiago1234/MZT-rna-stability
Crosstalk between codon optimality and 3' UTR cis-elements dictates mRNA stability
matpetrone/CNN_CellsRecognition
A CNN in PyTorch that counts cells in images
rethomics/behavr
Data structure to store and manipulate high throughput behavioural data in R
rethomics/damr
Read TriKinetics' DAM data in R
rethomics/sleepr
Analyse sleep from movement (e.g. in Drosophila)
stephenjwilson/MeTeOR
MeTeOR, or the MeSH Term Objective Reasoning network, is a network representation of genes, drugs, and diseases built on MeSH terms curated by the National Library of Medicine