Pinned Repositories
biopython
Official git repository for Biopython (originally converted from CVS)
phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
biopython
My fork of the BioPython repo where I test custom branches (which I delete if they are merged)
biopython-coronavirus
Biopython Jupyter Notebook tutorial to characterize a small genome
biopython-notebook
Notebooks to introduce biopython
biopython_workshop
A basic introduction to Biopython, intended for a classroom based workshop
CrUtils
Various (mostly bioinformatic) utility scripts
emojify
Obfuscate your python script by converting it to emoji icons
MMprofiler
Create mmseq2 profiles from (unaligned) protein families/clusters, under development
chris-rands's Repositories
chris-rands/emojify
Obfuscate your python script by converting it to emoji icons
chris-rands/biopython-coronavirus
Biopython Jupyter Notebook tutorial to characterize a small genome
chris-rands/biopython
My fork of the BioPython repo where I test custom branches (which I delete if they are merged)
chris-rands/biopython_workshop
A basic introduction to Biopython, intended for a classroom based workshop
chris-rands/CrUtils
Various (mostly bioinformatic) utility scripts
chris-rands/biopython-notebook
Notebooks to introduce biopython
chris-rands/MMprofiler
Create mmseq2 profiles from (unaligned) protein families/clusters, under development
chris-rands/anndata
My fork of Annotated data.
chris-rands/annotated_profile_HMMs
Sets of protein familes represented as profile HMMs annotated for antibiotic resistance and virulence function.
chris-rands/biofast
Benchmarking programming languages/implementations for common tasks in Bioinformatics
chris-rands/biopython.github.io
Source of biopython.org website, migrated from MediaWiki
chris-rands/black
The uncompromising Python code formatter
chris-rands/cpython
My fork of the Python programming language
chris-rands/megahit
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
chris-rands/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
chris-rands/MMseqs2
My fork of the MMseqs2 repo
chris-rands/mnnpy
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
chris-rands/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
chris-rands/numpy
The fundamental package for scientific computing with Python.
chris-rands/phageCRannotate
chris-rands/phigaro
My fork of phigaro for bug fixes etc.
chris-rands/public_scrnaseq
[WORK IN PROGRESS] scRNA-seq basic data processing of the genes vs. cells matrix (mirror from gitlab)
chris-rands/rgi
My fork of the Resistance Gene Identifier (RGI).
chris-rands/scanpy
My fork of the scanpy repo
chris-rands/scrublet
Detect doublets in single-cell RNA-seq data
chris-rands/too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.