phages

There are 15 repositories under phages topic.

  • What_the_Phage

    replikation/What_the_Phage

    WtP: Phage identification via nextflow and docker or singularity

    Language:Nextflow103715115

  • bobeobibo/phigaro

    Phigaro is a scalable command-line tool for predicting phages and prophages

    Language:HTML5043515

  • voorloopnul/awesome-phages

    A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

    47705

  • refresh-bio/PHIST

    Phage-Host Interaction Search Tool

    Language:C++274102

  • SchlossLab/Hannigan_CRCVirome_mBio_2018

    Investigating the gut virus communities associated with colon cancer.

    Language:PostScript116508

  • deprekate/prfect

    Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes

    Language:Python7371
  • decouphage

    voorloopnul/decouphage

    The art of decorating a phage genome by gluing feature cutouts into it.

    Language:Python5202

  • Dreycey/PhageBox

    The PhageBox is a digital microfluidics device that integrates temperature and magnetic control modules at the hardware level. This repository contains the embedded software which contains a finite state machine for representing PCR and a graphical user interface for visual feedback and operation.

    Language:C++2121

  • ErillLab/LPEG_phages

    Code and data for the analysis of TF-binding sites positional entropy in phage genomes, used in Mascolo et al. (2022)

    Language:Python1600

  • ErillLab/SPA

    Code and data used to perform the tAI analysis in deCarvalho et al. (2023)

    Language:Scheme1400

  • JoshuaIszatt/PhageOrder

    PhageOrder is a python package designed to reorder phage genomes based on its terminase subunit.

    Language:Python0100

  • andreaskuster/igem19-ethz-prediction-model

    iGEM 19 Synthetic Biology

    Language:Python12

  • Dreycey/PhageFilter

    PhageFilter uses a Sequence Bloom Tree (SBT) to filter bacteriophage reads from metagenomic files.

    Language:Rust23

  • Ebedthan/mashphage

    Fast and accurate whole-genome clustering of (actino) bacteriophages

    Language:Python20

  • ssi-dk/BPS_FBI_scripts_Clostyper

    Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.

    Language:Python40