muellan/metacache

Issues

• Guidance for working with large reference data sets

  #37 opened 2 years ago by ohickl
  6

• Provide memory mapping option?

  #43 opened 6 months ago by ChillarAnand
  1

• Allow for more threads?

  #16 opened 4 years ago by punnettsun
  9

• Issues with partitioned DB and merging

  #42 opened 7 months ago by jaimeortiz-david
  0

• Scientific notation in abundance file result in rounding errors

  #39 opened a year ago by donovan-h-parks
  5

• Unranked targets when building custom DB

  #35 opened 2 years ago by donovan-h-parks
  5

• long reads

  #18 opened 4 years ago by xgnusr
  4

• Ion Xpress (Ion Torrent)

  #29 opened 3 years ago by jaimeortiz-david
  1

• Segmentation fault (core dump) issue on custom DB

  #41 opened 9 months ago by donovan-parks
  2

• Segmentation fault (core dumped)

  #27 opened 9 months ago by jaimeortiz-david
  6

• Using DB partition and MERGE does not match single DB abundance results

  #40 opened a year ago by jaimeortiz-david
  0

• Interpretation of reported abundance table

  #10 opened 5 years ago by donovan-h-parks
  6

• GPU version on bioconda

  #38 opened 2 years ago by fgvieira
  3

• Compiling with uint64_t

  #36 opened 2 years ago by ohickl
  5

• Make throws the Invalid Option error if multiple macros are passed

  #34 opened 2 years ago by banderoz
  1

• Merging results from querying partitioned database

  #33 opened 2 years ago by jaimeortiz-david
  16

• Results Output Visualization

  #31 opened 2 years ago by punnettsun
  1

• Building a custom DB

  #32 opened 3 years ago by donovan-parks
  2

• Database Build Files

  #30 opened 3 years ago by punnettsun
  2

• Segmentation fault when using --lowest species

  #28 opened 3 years ago by donovan-h-parks
  3

• Interpreting abundance profile

  #26 opened 3 years ago by donovan-h-parks
  5

• Report MetaCache version

  #25 opened 3 years ago by donovan-h-parks
  1

• Using as a library

  #21 opened 4 years ago by anuradhawick
  1

• metacache-build-refseq gets killed at 46% every time i try to build the database

  #23 opened 3 years ago by clanzett
  2

• Problem building DB with metacache-build-refseq

  #24 opened 3 years ago by donovan-parks
  6

• Database load times highly and unexpectedly non-linear

  #22 opened 3 years ago by jdwinkler-lanzatech
  7

• Support for gzipped reads

  #12 opened 4 years ago by donovan-h-parks
  12

• AFS20 database construction

  #19 opened 4 years ago by TahaShahroodi
  4

• Custom Database Creation

  #14 opened 4 years ago by punnettsun
  11

• Classification abundances output not showing all ranks

  #15 opened 4 years ago by punnettsun
  4

• Out file interpretation

  #17 opened 4 years ago by bielasilva
  2

• Strain Level Database

  #13 opened 4 years ago by punnettsun
  2

• Form and variety

  #11 opened 5 years ago by donovan-h-parks
  2

• separator not properly handled in the output

  #7 opened 5 years ago by leoqiang
  5

• target limit: number of genomes or sequences?

  #9 opened 5 years ago by donovan-h-parks
  2

• Segmentation fault

  #8 opened 5 years ago by alex-dem
  7

• metacache-build-refseq and download-ncbi-genomes not downloading genomes

  #6 opened 7 years ago by sturne29
  4

• speedup refseq downloads - suggestion not issue

  #5 opened 7 years ago by accopeland
  3

• error compiling metacache

  #4 opened 7 years ago by kengcher
  5

• Enhancement: Provide NCBI taxids in output

  #3 opened 7 years ago by sjaenick
  2

• Argument handling

  #1 opened 7 years ago by sjaenick
  2