anuradhawick
Solutions Architect, Software Engineer, PhD in Computer Science, Researcher in Bioinformatics
The Australian National UniversityAdelaide
Pinned Repositories
terraform-aws-serverless-beacon
Serverless implementation of Beacon V2 protocol, to enable cheaper and faster exchange of genomic and phenotypic information
algo-competitions
Place to have all the algo stuff I do
aws-lambda-serverless-boilerplate
Boilerplate for AWS lambda deployment using serverless framework
GPU-Optimized-Biological-Data-Analysis
kmertools
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
LRBinner
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
MetaBCC-LR
Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
seq2vec
Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!
vinyl-search
All about Sri Lankan vintage and modern music records
pocketdrive-server
anuradhawick's Repositories
anuradhawick/kmertools
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
anuradhawick/LRBinner
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
anuradhawick/aws-lambda-serverless-boilerplate
Boilerplate for AWS lambda deployment using serverless framework
anuradhawick/MetaBCC-LR
Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
anuradhawick/seq2vec
Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!
anuradhawick/GraphPlas
GraphPlas: Assembly Graph Assisted Recovery of Plasmidic Contigs from TGS Assemblies
anuradhawick/clipper
Useful clipping board for Mac and Linux
anuradhawick/PlasLR
Adaptation of contig based plasmid classification for error prone long reads (PacBio and ONT) to improved genome assembly
anuradhawick/oblr
Read overlap graph based metagenomics binning using Probabilistic Sampling and Geometric Learning
anuradhawick/algo-competitions
Place to have all the algo stuff I do
anuradhawick/terraform-aws-serverless-beacon
Implementation of Beacon in a serverless (FaaS) manner, to enable cheaper and more versatile (e.g. over distributed datasets) queries
anuradhawick/typefaster
TypeFaster Web App - helps typing practice. This is not only a simple web-app but serves me as a comprehensive terraform template for web deployments.
anuradhawick/vinyl-search
All about Sri Lankan vintage and modern music records
anuradhawick/AI-Album
A template project that puts together BLIP image captioning and facial feature extraction to emulate a simple web based photo manager.
anuradhawick/AI-Album-Notebooks
anuradhawick/anuradhawick
Readme for my Github
anuradhawick/anuradhawick.github.io
There is nothing here. Head to https://www.anuradhawick.com!
anuradhawick/aws-athena-query-federation
The Amazon Athena Query Federation SDK allows you to customize Amazon Athena with your own data sources and code.
anuradhawick/beacon2-ri-api
Beacon v2 Reference Implementation (API)
anuradhawick/CUDA-k-mer-counting
Code used for brainstorming 2022-Jun
anuradhawick/dask-docker-boilerplate
Getting a dask server up and running
anuradhawick/dask_bio
Dask snippets for bioinformatics
anuradhawick/DeepFaceLab
DeepFaceLab is the leading software for creating deepfakes.
anuradhawick/Dual-aae
Deep Clustering Learning
anuradhawick/fuzzy-match
Matches Nucleotide targets against sequences. Designed for finding off-targets.
anuradhawick/generic-poa
anuradhawick/MetaBCC-LR-CUDA
anuradhawick/sbeacon-exploration
Serverless Beacon v2 exploration for UMCCR use cases
anuradhawick/seq2covvec
Fast sequence vectorization for metagenomics analysis. Converts input sequences into k-mer coverage vectors, fast! Read more detail in our paperhttps://doi.org/10.1093/bioinformatics/btaa441
anuradhawick/terraform-aws-emrserverless
Terraform module for the AWS EMR Serverless application