dna-sequences
There are 427 repositories under dna-sequences topic.
lucidrains/enformer-pytorch
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
asntech/intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
nickpoison/astsa
R package to accompany Time Series Analysis and Its Applications: With R Examples -and- Time Series: A Data Analysis Approach Using R
Griffan/VerifyBamID
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
helicalAI/helical
This repository contains the python package for Helical
OpenHero/gblastn
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
BioJulia/BioAlignments.jl
Sequence alignment tools
muellan/metacache
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
smortezah/smashpp
Find and visualize rearrangements in DNA sequences
jvrana/benchling-api
A python wrapper for the benchling api
dputhier/pygtftk
A python package and a set of shell commands to handle GTF files
Edinburgh-Genome-Foundry/sequenticon
:space_invader: Generate identicons for DNA sequences with Python
QData/ChromeGCN
Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification
Edinburgh-Genome-Foundry/crazydoc
Read DNA sequences from colourful Microsoft Word documents
debbiemarkslab/variational-synthesis
Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AISTATS, 2022).
LaoZZZZZ/bartender-1.1
This bartender version could handle arbitrary length of barcode
Binomica-Labs/Repo-Bio
Binomica Public Repository for Biological Parts
bcgsc/SSAKE
🍶 Genome assembly with short sequence reads
EricArcher/strataG
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
UC-Davis-molecular-computing/scadnano
Web application for designing DNA structures such as DNA origami.
graph-part/graph-part
GraphPart, a data partitioning method for ML on biological sequences
yhoogstrate/fastafs
toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
asmitapoddar/Deep-Learning-DNA-Sequences
Deep learning for identifying important motifs in DNA sequences. Exploration of the structure of the human genome by training neural network architectures (CNN, LSTM, Attention).
JinsenLi/deepDNAshape
A method to predict DNA shape features considering farther flanking region.
laurentnoe/yass
genomic alignment similarity search tool
PlantandFoodResearch/MCHap
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
cobilab/smash
A tool to find and visualize rearrangements in DNA sequences
drewwiens/TensorFlow-DNNs-for-Predicting-DNA-Transcription-Factor-Binding
Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences
UC-Davis-molecular-computing/scadnano-python-package
Python scripting library for generating designs readable by scadnano.
btmartin721/raxml_ascbias
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
cobilab/geco3
An efficient DNA sequence compressor using Neural Networks
bioinfologics/Pseudoseq.jl
Fake genomes, fake sequencing, real insights.
larapollehn/remy
Visualization of nucleotide alignment algorithms 🧬 DNA sequence as input, best aligning match as output.
chasewnelson/EBT
Evolutionary Bioinformatics Toolkit (EBT)
egochao/DeePromoter
Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the gene by controlling the binding of RNA polymerase)