Griffan/VerifyBamID

Issues

• Segmentation fault (core dumped)

  #45 opened 6 months ago by AnqiZhang-HIT
  14

• make fail "htslib/bgzf.h: No such file or directory"

  #37 opened 6 months ago by fp215
  1

• Resource files for mouse data

  #41 opened 6 months ago by xie186
  1

• Best practice for estimating contamination within the same ancestry

  #57 opened 6 months ago by Han-Cao
  1

• Running time is diff

  #62 opened 6 months ago by hulb0203
  10

• Can VerifyBamID identify the source of contamination?

  #33 opened 3 years ago by ManavalanG
  2

• VerifyBamID: Ensuring Accurate .mu and .UD File Creation

  #61 opened 9 months ago by shadizaheri
  1

• Resource files for b38 exome

  #35 opened 3 years ago by dtaliun
  3

• Error when running VerifyBamID with more than 4PCs

  #58 opened 10 months ago by lo2811
  5

• Can verifyBamID2 be used to detect contamination in non-human species data?

  #52 opened a year ago by maruiqi0710
  1

• --max-depth Doesn't Do Anything?

  #56 opened a year ago by michaelsykes
  4

• Error from running VBID2 after installing from source

  #55 opened a year ago by poloarol
  2

• Very high FREEMIX value with WES experiments

  #54 opened a year ago by rulixxx
  3

• make fails with htslib 1.13 (1.11 OK)

  #29 opened a year ago by myourshaw
  1

• Generating resource files

  #51 opened a year ago by z1242099843
  1

• Insufficient Available markers, check input bam depth distribution in output pileup file after specifying --OutputPileup

  #53 opened a year ago by cangyilin
  1

• the bug about argument "--ignoreRG"

  #50 opened 2 years ago by WortJohn
  3

• make fails with htslib 1.11

  #49 opened 2 years ago by nalawu
  8

• After Downloading via Docker (and singularity), Fatal Error Appears: No such file or directory

  #48 opened 2 years ago by bioinfo-fiend
  4

• VBID2 may be underestimating intra-family contamination when applied to long reads (CCS)

  #46 opened 2 years ago by SHuang-Broad
  6

• VB2 on RNA shortgun sequecing

  #47 opened 2 years ago by manifestoso
  1

• bug: --SVDPrefix required when --REFVCF supplied

  #44 opened 2 years ago by manifestoso
  8

• Long read bam processing

  #43 opened 2 years ago by SHuang-Broad
  6

• verifybamid2 bioconda native

  #42 opened 2 years ago by manifestoso
  1

• ReferencePanel.vcf.gz

  #40 opened 2 years ago by yinbinqiu
  11

• Insufficient Available markers?

  #39 opened 2 years ago by lingjoyo
  1

• Segmentation fault

  #38 opened 2 years ago by jianbiaoli
  5

• CHIPMIX NA value

  #36 opened 3 years ago by iagooteroc
  1

• Memory leak error

  #34 opened 3 years ago by gevro
  6

• Job runs out of memory in cluster

  #32 opened 3 years ago by iagooteroc
  17

• VBID2 not seeing read evidence even though it is present.

  #23 opened 3 years ago by yfarjoun
  10

• VerifyBamID v2 vs v1

  #25 opened 3 years ago by xtmgah
  8

• Getting the error message during the installation.

  #28 opened 3 years ago by u1200538
  3

• Question about the tool options

  #30 opened 3 years ago by u1200538
  4

• chr prefix in resources files

  #26 opened 3 years ago by shadrinams
  1

• Bam is either very-very shallow, or aligned to the wrong reference

  #27 opened 4 years ago by jazberna1
  2

• verifybamid2 exits with insufficient markers error message.

  #24 opened 4 years ago by carmelinacharalambous
  0

• create reference

  #22 opened 4 years ago by Myskiper
  1

• error

  #21 opened 4 years ago by Myskiper
  6

• initialization fail to parse region

  #11 opened 4 years ago by ZjmaNMU
  1

• Guidance on RNA-Seq / Tumor Data

  #20 opened 4 years ago by sstadick
  4

• VerifyBamID libstdc++.so.6 version issues

  #19 opened 4 years ago by GuoTingYou
  2

• Installation error

  #17 opened 4 years ago by GSBaohuaGu
  2

• verifybamid2 doesn't recognize command line parameters correctly

  #18 opened 4 years ago by eastreen
  13

• incorrect PCA coordinate for samples

  #16 opened 5 years ago by yuqiu77
  2

• Missing libcurl dependency (Compile Error)

  #15 opened 6 years ago by seppinho
  2

• can this software handle panel(~100k) data

  #14 opened 6 years ago by GSBaohuaGu
  4

• question ！！！！！

  #12 opened 6 years ago by feihongloveworld
  12

• verifyBamID can't handle missing trailing fields of sample

  #13 opened 6 years ago by matmu
  3

• Incorrect sample names in selfSM output from BAM files with SM as last item

  #10 opened 6 years ago by chapmanb
  2