Pinned Repositories
long-read-pipelines
Long read production pipelines
lrma-cloud-utils
A python library for interacting with GCS, Cromwell, and Terra
ACTG
ACTG: Nucleotide syntax highlighting
bioconda-recipes
Conda recipes for the bioconda channel.
canu-wdl
A customized fork of canu 1.9 for WDL-ization in the cloud
cromwell-monitor
Generate stats for Cromwell task calls including resource utilization & estimated costs
cromwell-task-monitor-bq
Scalable reporting of Cromwell task call resource monitoring data to BigQuery
gatk
GATK4 development
GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
graphgenomeviewer
SHuang-Broad's Repositories
SHuang-Broad/ACTG
ACTG: Nucleotide syntax highlighting
SHuang-Broad/bioconda-recipes
Conda recipes for the bioconda channel.
SHuang-Broad/canu-wdl
A customized fork of canu 1.9 for WDL-ization in the cloud
SHuang-Broad/cromwell-monitor
Generate stats for Cromwell task calls including resource utilization & estimated costs
SHuang-Broad/cromwell-task-monitor-bq
Scalable reporting of Cromwell task call resource monitoring data to BigQuery
SHuang-Broad/gatk
GATK4 development
SHuang-Broad/GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
SHuang-Broad/graphgenomeviewer
SHuang-Broad/hapdip
The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data
SHuang-Broad/test-autobump
blah test
SHuang-Broad/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
SHuang-Broad/lrma-cloud-utils
DSP methods lrma team cloud utils
SHuang-Broad/mobster
For more details about Mobster please see
SHuang-Broad/moonwalk
A fast & minimal Jekyll blog theme with clean dark mode
SHuang-Broad/PublicResourceSharing
For sharing non-sensitive resources with public
SHuang-Broad/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
SHuang-Broad/wdl
Workflow Description Language - Specification and Implementations
SHuang-Broad/wdl-relative-import-test
test how to make relative import work in WDL