bam
There are 158 repositories under bam topic.
implus/PytorchInsight
a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results
samtools/htslib
C library for high-throughput sequencing data formats
biod/sambamba
Tools for working with SAM/BAM data
samtools/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
bioSyntax/bioSyntax
Syntax highlighting for computational biology
mbhall88/rasusa
Randomly subsample sequencing reads or alignments
dashbuilder/dashbuilder
Dashboard composition tooling based on the Uberfire framework
broadinstitute/viral-ngs
Viral genomics analysis pipelines
kacos2000/Win10
Win 10/11 related research
Genetalks/gtz
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
divonlan/genozip
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
davetang/learning_bam_file
Learning the Sequence Alignment/Map format
Griffan/VerifyBamID
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
chrovis/cljam
A DNA Sequence Alignment/Map (SAM) library for Clojure
bamlab/dev-standards
https://bamtech.gitbooks.io/dev-standards/
Mohammedcha/FaceBook-BAM-Quiz-Instant-Game
FaceBook Instant Game - BAM Quiz
mdshw5/simplesam
Simple pure Python SAM parser and objects for working with SAM records
telatin/bamtocov
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
alignoth/alignoth
Creating alignment plots from bam files
brentp/hts-nim-tools
useful command-line tools written to showcase hts-nim
brentp/hts-python
pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
lpryszcz/bin
My bioinfo toolbox
sbslee/fuc
Frequently used commands in bioinformatics
biod/BioD
A D library for computational biology and bioinformatics
JetBrains-Research/bioinf-commons
Bioinformatics library in Kotlin
orangeSi/GSSplayground
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
bamlab/nest-rabbit-tasks
nest-rabbit-worker is a TaskQueue based upon RabbitMQ for NestJS
showteeth/scfetch
Access and Format Single-cell RNA-seq Datasets from Public Resources
BioJulia/XAM.jl
Parse and process SAM and BAM formatted files
tjparnell/biotoolbox
Tools for querying and analysis of genomic data
maragkakislab/samql
SQL-like query language for the SAM/BAM file format
sneuensc/mapache
mapping pipeline for ancient DNA
biosails/pheniqs
Fast and accurate sequence demultiplexing
developer0hye/ZAM
ZAM: Zero parameter Attention Module
quinlan-lab/hts-python
pythonic wrapper for htslib
sigven/cacao
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer