Issues
- 1
cleaning sam idx when using multiterators
#1823 opened by pd3 - 2
cram_io.c cannot find libdeflate
#1830 opened by NewtontheNeuron - 6
Sam to gfa?
#1824 opened by Axze-rgb - 4
When using the sam_parse1 function with third-generation sequencing data, an error will be reported: invalid QUAL character.
#1813 opened by zhaobu - 1
Seeking for the BEST practice of splitting CRAM file
#1825 opened by omegahh - 5
CRAM conversion : options store_nm and store_md
#1827 opened by JulieBlasquiz - 3
VCF 4.4/4.5 specs: rlen should be computed rather than populated from END INFO field
#1820 opened by davmlaw - 1
Google Cloud Storage hFILE not using multipart / resumable uploads or downloads for reliability
#1814 opened by pettyalex - 1
When I try to install GangSTR, I always encounter this problem repeatedly during the ‘make’ step
#1819 opened by beixuancheng - 2
htslib/vcf : question / feature request/function missing (?) to reset bcf_sr_next_line and set a new bcf_sr_set_regions ?
#1815 opened by lindenb - 4
- 2
which function to get alignment of query's mate in sam.h or other header files
#1804 opened by leon945945 - 11
bam_cigar_opchr - minor issue
#1789 opened by kullrich - 4
- 1
fatal error: curl/curl.h: No such file or directory
#1793 opened by sawma-k - 1
assert(0) is bad practice
#1791 opened by mp15 - 3
How to control the version of htslib?
#1790 opened by xmy1990 - 1
Better detection for avx512f functionality
#1773 opened by ryandesign - 1
Inconsistent truncation of floating-point tag values during conversion with sam_parse1 function from htslib
#1784 opened by zhaobu - 1
High memory usage with faidx API
#1783 opened by tijyojwad - 3
- 0
No warning on messed up VCF
#1778 opened by pd3 - 1
Snyk Security Scan Failure: Vulnerabilities Detected in samtools/htslib@1.20
#1776 opened by superbsky - 7
bgzip performance drop from v1.16
#1767 opened by koriege - 4
- 1
bcftools corrupts duplicate GT format fields
#1733 opened by anthakki - 1
- 5
feature request: parallelize tabix
#1735 opened by dbolser - 2
- 1
Samtools view fails on CRAM and compressed reference if .gzi file is missing
#1744 opened by TheodoreSpeaks - 0
bgzip: allow specification of output name.
#1726 opened by ghuls - 4
bcftools-1.19: Invalid index is produced by --write-index and --threads on my bcf.gz files
#1740 opened by graphenn - 6
wishlist s3 cache
#1748 opened by cariaso - 0
todo: Improve `--regions-overlap variant`
#1746 opened by pd3 - 0
- 0
- 1
- 2
- 3
formerly caught bgzf_idx_amend_last symbol
#1722 opened by emollier - 2
Unable to install the HTSlib on Ubuntu 20.04
#1721 opened by LEGMCGILL - 2
Reading BCFtools FORMAT/BCSQ field
#1715 opened by barneyhill - 1
`annot-tsv --version` does not follow conventions
#1706 opened by jmarshall - 3
Segmentation fault of htslib c program written myself
#1708 opened by leon945945 - 0
Allocation size too big/invalid memory access during `extend_ref`/`cram_add_to_ref`
#1699 opened by OctavioGalland - 0
Heap overflow during hts_md5_update
#1700 opened by OctavioGalland - 0
Use-after-free during `hts_md5_update`
#1698 opened by OctavioGalland - 0
Assertion violation during `cram_ref_decr_locked`
#1696 opened by OctavioGalland - 0
Assertion violation during `cram_beta_encode_init`
#1697 opened by OctavioGalland - 1
Heap overflow during `hts_md5_update`
#1693 opened by OctavioGalland - 1
Heap overflow during `sam_hdr_add_pg`
#1694 opened by OctavioGalland