Issues
- 1
Better detection for avx512f functionality
#1773 opened by ryandesign - 1
Inconsistent truncation of floating-point tag values during conversion with sam_parse1 function from htslib
#1784 opened by zhaobu - 1
High memory usage with faidx API
#1783 opened by tijyojwad - 3
- 3
- 0
No warning on messed up VCF
#1778 opened by pd3 - 1
Snyk Security Scan Failure: Vulnerabilities Detected in samtools/htslib@1.20
#1776 opened by superbsky - 7
bgzip performance drop from v1.16
#1767 opened by koriege - 4
- 1
bcftools corrupts duplicate GT format fields
#1733 opened by anthakki - 1
- 5
feature request: parallelize tabix
#1735 opened by dbolser - 2
- 1
Samtools view fails on CRAM and compressed reference if .gzi file is missing
#1744 opened by TheodoreSpeaks - 0
bgzip: allow specification of output name.
#1726 opened by ghuls - 4
bcftools-1.19: Invalid index is produced by --write-index and --threads on my bcf.gz files
#1740 opened by graphenn - 6
wishlist s3 cache
#1748 opened by cariaso - 3
htslib in pysam.fetch on S3 Bucket
#1670 opened by StephanHolgerD - 0
todo: Improve `--regions-overlap variant`
#1746 opened by pd3 - 0
- 0
- 1
- 2
- 3
formerly caught bgzf_idx_amend_last symbol
#1722 opened by emollier - 2
Unable to install the HTSlib on Ubuntu 20.04
#1721 opened by LEGMCGILL - 2
Reading BCFtools FORMAT/BCSQ field
#1715 opened by barneyhill - 1
`annot-tsv --version` does not follow conventions
#1706 opened by jmarshall - 3
Segmentation fault of htslib c program written myself
#1708 opened by leon945945 - 0
Allocation size too big/invalid memory access during `extend_ref`/`cram_add_to_ref`
#1699 opened by OctavioGalland - 0
Heap overflow during hts_md5_update
#1700 opened by OctavioGalland - 0
Use-after-free during `hts_md5_update`
#1698 opened by OctavioGalland - 0
Assertion violation during `cram_ref_decr_locked`
#1696 opened by OctavioGalland - 0
Assertion violation during `cram_beta_encode_init`
#1697 opened by OctavioGalland - 1
segfault during `cram_generate_reference`
#1691 opened by OctavioGalland - 0
segfault during `hts_md5_update`
#1692 opened by OctavioGalland - 1
Heap overflow during `hts_md5_update`
#1693 opened by OctavioGalland - 1
Heap overflow during `sam_hdr_add_pg`
#1694 opened by OctavioGalland - 1
Bug in ks_expand?
#1686 opened by rmhubley - 2
Request to support multiple input files. Currently, bgzip <file1> <file2> only compresses <file1>.
#1642 opened by bw2 - 1
Tabix failed on FTP file
#1684 opened by stunme - 6
Large memory leak involving libcurl when attempting to use htslib C library on remote BAM
#1678 opened by rlorigro - 1
configure error on ubuntu lastest version
#1673 opened by kemin711 - 17
./configure with or without libcurl htslib-1.17
#1652 opened by grenaud - 2
Version 1.18 of tabix exhibits poorer performance in querying locus information compared to version 1.16.
#1661 opened by TuBieJun - 6
- 2
- 3
Inconsistency in samtools stats output - cram index issue?
#1639 opened by jts - 9
Failed to populate reference for id
#1627 opened by egnarora - 2
base mod API clarification
#1635 opened by jts - 2
extract reads by read name
#1629 opened by leon945945