htslib
There are 34 repositories under htslib topic.
samtools/htslib
C library for high-throughput sequencing data formats
seqan/seqan
SeqAn's official repository.
brentp/cyvcf2
cython + htslib == fast VCF and BCF processing
brentp/hts-nim
nim wrapper for htslib for parsing genomics data files
Illumina/paragraph
Graph realignment tools for structural variants
walaj/SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
brentp/hts-python
pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
cancerit/cgpBigWig
BigWig manpulation tools using libBigWig and htslib
quinlan-lab/hts-python
pythonic wrapper for htslib
Zilong-Li/vcfpp
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
brentp/hts-zig
ziglang + htslib
bio-cr/hts.cr
HTSlib bindings for Crystal
biodata-fun/htslib_howto
Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
kojix2/ruby-htslib
HTSlib bindings for Ruby
lindenb/rbcf
R Bindings for htslib/bcf
wtsi-npg/bambi
Process Illumina instrument data into SAM/BAM/CRAM files.
Zilong-Li/vcfppR
vcfpp.h + htslib + Rcpp = fast VCF/BCF https://doi.org/10.1093/bioinformatics/btae049
bio-cr/bam-filter
Use simple expressions to filter a BAM/CRAM file
lindenb/x11hts
X11 related utilities for hts
lindenb/bcfselectgt
VCF/Bcf genotypes filtering using htslib
adamjorr/kbbq
reference-free base quality score recalibration
hiruna72/htslib
[CMake build] C library for high-throughput sequencing data formats
innovate-invent/bampy
Python implementation of htslib supporting BAM, SAM, and BGZF compression
kcleal/zights
htslib for the zig build system
lindenb/htsplusplus
Select variants from VCF/BCF spaced by a distance 'd'.
YuzukiTsuru/TTS-Tools
Some useless thing for Speech Synthesis System
CHRUdeLille/bcftools_containers
bcftools singularity container
sethbrin/cpp-htslib
A wrapper of htslib
aleighbrown/facets_snakemake
Pipeline for running the FACETS copy number caller using Snakemake
dantaki/sv2bed
Convert SV VCFs to BED, a wrapper for bcftools query
Grelot/reserveBenefit--snpsdata_analysis
Codes i wrote for the paper "genomic resources for Mediterranean fishes"
hiruna72/samtools
[CMake build] Tools (written in C using htslib) for manipulating next-generation sequencing data
rhpvorderman/htspy
Fast pythonic BAM processing according to the HTS format specifications..
tt6746690/htsget
A server implementation of htsget protocol