walaj/SeqLib

Issues

• hi

  #62 opened 2 years ago by lqsae
  2

• BWA/Fermi submodules need update for GCC 10

  #66 opened 2 years ago by julianhess
  0

• function ProperOrientation() have a bug?

  #61 opened 4 years ago by linhxxx
  0

• Name space pollution - there is another seqlib

  #56 opened 4 years ago by tillea
  4

• Build failure with newer libjsoncpp

  #58 opened 4 years ago by LocutusOfBorg
  4

• Could SeqLib and htslib work out what a public cram api should be?

  #21 opened 4 years ago by detrout
  2

• BamReader::SetCramReference

  #34 opened 6 years ago by agraubert
  3

• Version 1.1.2 has changed API

  #24 opened 7 years ago by tillea
  1

• The link to the doxygen API is broken

  #55 opened 5 years ago by rkostadi
  0

• Undefined Constructor for template class GenomicRegionCollection

  #54 opened 5 years ago by yonghanyu
  1

• heap-buffer-overflow

  #52 opened 5 years ago by Ahhgust
  0

• BamRecord's PositionEnd() inconsistent with Position()

  #49 opened 5 years ago by Ahhgust
  0

• AlignmentPosition() is wrong with hard clips

  #46 opened 5 years ago by Ahhgust
  3

• determine if a quality string is empty

  #48 opened 5 years ago by ekg
  0

• Looking for functionalities to replace BamTools with SeqLib

  #47 opened 5 years ago by PauchardL
  0

• undefined reference to xx error for a test

  #20 opened 6 years ago by taojinsheng
  8

• Libraries are placed in {prefix}/bin and not {prefix}/lib

  #45 opened 6 years ago by edawson
  1

• master refers to non-existent htslib commit

  #11 opened 6 years ago by sambrightman
  1

• Example showing how to compile my own program containing SeqLib

  #22 opened 6 years ago by alifare
  2

• Should I update the htslib bwa to the latest version directly or need some code refactor?

  #40 opened 6 years ago by wulj2
  1

• Some functionality enchancement

  #41 opened 6 years ago by wulj2
  3

• strongly advice to add SupplementaryFlag() in BamRecord.h

  #39 opened 6 years ago by wulj2
  0

• minor bug found

  #36 opened 6 years ago by wulj2
  1

• Default Constructor may be optimized in case segment fault happens

  #37 opened 6 years ago by wulj2
  1

• ChrName function in BamRecord Class logic wrong

  #35 opened 6 years ago by wulj2
  1

• fatal: unable to access 'https://github.com/walaj/SeqLib.git/': Peer's Certificate has expired.

  #28 opened 6 years ago by ShannonDaddy
  3

• SeqLib::BamWriter.WriteRecord() seems to be truncating the qname field

  #33 opened 6 years ago by bkohrn
  2

• Segmentation Fault when running

  #32 opened 6 years ago by bkohrn
  3

• fatal: unable to access 'https://github.com/walaj/SeqLib.git/': Peer's Certificate has expired.

  #27 opened 6 years ago by ShannonDaddy
  0

• malloc(): smallbin double linked list corrupted

  #29 opened 6 years ago by rwdavies
  1

• Paired end/mate mair reads

  #18 opened 8 years ago by Ahhgust
  4

• Add different modes to BamWriter.Open

  #26 opened 6 years ago by 1dayac
  2

• lzma.h: No such file or directory - but works for htslib 1.9

  #25 opened 6 years ago by jelber2
  2

• Could you settle with official bwa and fermi-lite libraries

  #13 opened 8 years ago by tillea
  18

• Close CRAM reference

  #23 opened 7 years ago by rwdavies
  7

• incomplete error handling

  #19 opened 8 years ago by brentp
  5

• can't Compile successful

  #17 opened 8 years ago by pobin6
  4

• Fermi assembler issue

  #16 opened 8 years ago by Ahhgust
  1

• how to know mismatch base position and cigar value of every base at a read ?

  #15 opened 8 years ago by zeronot
  1

• can I use SeqLib at my C scripts?

  #14 opened 8 years ago by zeronot
  2

• Benchmark run without optimization?

  #12 opened 8 years ago by h-2
  9

• config.status should not be version-controlled

  #10 opened 8 years ago by sambrightman
  1

• Improvement: Remove use of "__" reserved C++ prefix

  #9 opened 8 years ago by rob-p
  1

• Implicit conversion from istream to bool

  #8 opened 9 years ago by dodomorandi
  2

• Wrong header included and implicit type conversion error

  #3 opened 9 years ago by SHuang-Broad
  0

• Circular dependency between SnowUtils.h and GenomicRegion.h

  #2 opened 9 years ago by SHuang-Broad
  1

• Error when compiling

  #1 opened 9 years ago by SHuang-Broad
  3