linhxxx

Good good coding, day day up. 好好编程，天天向上

Shenzhen, Guang dong, China

Pinned Repositories

.tmux
🇫🇷 Oh My Tmux! Pretty & versatile tmux configuration / customization made with ❤️
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2020-NGSInfectedBodyFluids
scripts and data for Gu et al Nature Medicine 2020 manuscript
Language:Jupyter Notebook0 0 00
7-Zip-zstd
7-Zip with support for Brotli, Fast-LZMA2, Lizard, LZ4, LZ5 and Zstandard
Language:C0 0 00
bwa-meth
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
Language:PostScript1 0 00
misc
Useful small programs
Language:C1 1 00
pVACtools
Language:Python1 2 00
sambamba
Tools for working with SAM/BAM/CRAM data
Language:D1 0 00
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Language:Perl1 1 00
VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)
Language:Perl2 2 00
WGS_of_Han_Chinese_genomes
Language:C7 2 03

linhxxx's Repositories

linhxxx/bwa-meth
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
Language:PostScript1 0 00
linhxxx/7-Zip-zstd
7-Zip with support for Brotli, Fast-LZMA2, Lizard, LZ4, LZ5 and Zstandard
Language:C0 0 00
linhxxx/ABF-SDK
Resources for working with Axon Binary Format (ABF) Files
linhxxx/AECT
A deep learning based pipeline for TSS coverage denoising and feature extraction from shallow cell free DNA sequencing
Language:Python0 0
linhxxx/Audio-Spectrogram
Generating sound spectrograms using short-time Fourier transform that can be used for purposes such as sound classification by machine learning algorithms.
linhxxx/awesome-nanopore
A curated list of awesome nanopore analysis tools.
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linhxxx/BamAlignmentViewer
A program for plot the reads covered target position for BAM sequence alignment
Language:Python0 0
linhxxx/bonito
A PyTorch Basecaller for Oxford Nanopore Reads
Language:Python0 0
linhxxx/cfDNApipe
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
Language:Python0 0
linhxxx/Chiron
A basecaller for Oxford Nanopore Technologies' sequencers
Language:Python0 0
linhxxx/cragr
R package for CRAG
Language:R0 0
linhxxx/dorado
Oxford Nanopore's Basecaller
Language:C++0 0
linhxxx/Griffin
A flexible framework for nucleosome profiling of cell-free DNA
linhxxx/Griffin_analyses
Scripts for analyses in the Griffin manuscript
linhxxx/intervaltree
A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.
Language:Python0 0
linhxxx/matplotplusplus
Matplot++: A C++ Graphics Library for Data Visualization 📊🗾
linhxxx/molecular-cfDNA-fragmentomics
An et al. Nature Communications 2023
Language:Perl0 0
linhxxx/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Language:Nim0 0
linhxxx/Msuite2
Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance
Language:C++0 0
linhxxx/NA12878
Data and analysis for NA12878 genome on nanopore
linhxxx/pyABF
pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
Language:Jupyter Notebook0 0
linhxxx/pypysam
PyPy-compatible htslib routines for SAM/BAM alignment files
Language:Python0 0
linhxxx/reproduce_lucas_wflow
Language:R1 0
linhxxx/RLM
Read level DNA methylation analysis of bisulfite converted sequencing data
Language:C++0 0
linhxxx/RProp-1
Resilient backpropagation algorithm (RProp) optimizer implemented for Keras/TF
Language:Python0 0
linhxxx/scrappie
Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
Language:C0 0
linhxxx/serial_wave_port
基于Qt的串口调试助手，可绘制实时波形
linhxxx/VMwareWorkstation
手动上传官网的VMwareWorkstation安装包
linhxxx/wgbs_tools
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
Language:Python1 0
linhxxx/zstd
Zstandard - Fast real-time compression algorithm
Language:C0 0