jelber2
Lead Bioinformatician Nanopore Sequencing Lab Institute of Medical Genetics Center for Pathobiochemistry and Genetics Medical University of Vienna
Medical University of ViennaVienna, Austria
Pinned Repositories
deconseq
hac-to-duplex
immunome_2014
julia-bio
some JuliaLang bioinformatics scripts in the form of gists
zig-bio
Place to put some zig-related sequencing bioinformatics source codee
jelber2's Repositories
jelber2/hac-to-duplex
jelber2/zig-bio
Place to put some zig-related sequencing bioinformatics source codee
jelber2/immunome_2014
jelber2/julia-bio
some JuliaLang bioinformatics scripts in the form of gists
jelber2/alphafold
Open source code for AlphaFold.
jelber2/APA-Scan
Detection and visualization of annotated and potential Alternative Polyadenylation events
jelber2/bbmap-graal
jelber2/CRISPR-LICHT
jelber2/chopper
jelber2/etc
jelber2/genomes
genome assembly and annotation scripts
jelber2/hapmers
jelber2/herro
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14, Ultra-long (UL) reads.
jelber2/immunome_urtd
jelber2/jovian
Detecting variants in NGS short read data by sequence-to-sequence modeling
jelber2/meson-python
Meson PEP 517 Python build backend
jelber2/MultiPL-E
A multi-programming language benchmark for evaluating the performance of large language model of code.
jelber2/Mycelia
jelber2/podman
Podman: A tool for managing OCI containers and pods.
jelber2/rGO2TR
jelber2/rust-bk-tree
A BK-tree implementation in Rust.
jelber2/scicommander
Run shell commands in a scientifically reproducible and robust way
jelber2/stRainy
Graph-based assembly phasing
jelber2/transcriptomics
jelber2/ULPwgs
Utility tool that integrates commonly used bioinformatic tools for ULP-WGS analysis
jelber2/variant-calling
jelber2/vcfdist
vcfdist: Accurately benchmarking phased variant calls
jelber2/vechat
Correcting errors in noisy long reads using variation graphs
jelber2/VNtyper
A tool to genotype MUC1 coding VNTR in ADTKD
jelber2/XAM.jl
Parse and process SAM and BAM formatted files