jelber2

Lead Bioinformatician Nanopore Sequencing Lab Institute of Medical Genetics Center for Pathobiochemistry and Genetics Medical University of Vienna

Medical University of ViennaVienna, Austria

Pinned Repositories

deconseq
Language:Perl1 2 00
hac-to-duplex
Language:Python4 1 00
hapmers
Language:Typst1 1 00
immunome_2014
Language:TeX1 2 01
julia-bio
some JuliaLang bioinformatics scripts in the form of gists
1 1 00
zig-bio
Place to put some zig-related sequencing bioinformatics source codee
Language:Zig4 1 11

jelber2's Repositories

jelber2/deconseq
Language:Perl1 2 00
jelber2/arewebioyet.github.io
Rust in bioinformatics and computational biology
Language:Ruby0 1 00
jelber2/biofast
Benchmarking programming languages/implementations for common tasks in Bioinformatics
Language:C00
jelber2/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Language:Python1 0
jelber2/fastqc-rs
A quality control tool for FASTQ files written in rust
Language:Rust
jelber2/Filter_FASTQ_By_Average_Base_Quality
Language:Rust1 0
jelber2/go-test
testing go
Language:Go2 0
jelber2/GO2TR
Language:Python2 0
jelber2/harmony
Compute error profiles from alignments
Language:C++
jelber2/ideel
Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
Language:R
jelber2/immunome
Language:Python2 0
jelber2/immunome_arc
Language:Shell2 0
jelber2/juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Language:Shell
jelber2/minidot
Fast and pretty dotplots for whole genomes assemblies using minimap2 and R/ggplot2
Language:R1 0
jelber2/Minipolish
A tool for Racon polishing of miniasm assemblies
Language:Python1 0
jelber2/mudskipper
A tool for projecting genomic alignments to transcriptomic coordinates
Language:Rust0 0
jelber2/paleomix
Pipelines and tools for the processing of ancient and modern HTS data.
Language:Python1 0
jelber2/peregrine-2021
Language:Rust1 0
jelber2/pugz
Truly parallel gzip decompression
Language:C++1 0
jelber2/RAD-Scripts
Language:R
jelber2/sage
Language:Perl2 0
jelber2/SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data
Language:Python1 0
jelber2/sequencetools
Set of scripts etc. to work with DNA sequence and related files
Language:Perl1 0
jelber2/sesp_radseq
Language:Python2 0
jelber2/simdeez
easy simd
Language:Rust0 0
jelber2/sosp_mhc
Language:Python2 0
jelber2/STITCH
STITCH - Sequencing To Imputation Through Constructing Haplotypes
Language:R1 0
jelber2/tracerer
tracerer, 'Tracer for R', is an R package to work with the output of BEAST2
Language:R2 0