Pinned Repositories
agutil
A collection of python utilities -- Project migrated to gitlab
autocomplete-gml
GML autocompletions in atom
Beymax
A custom Discord bot and high-level bot API -- Moved to GitLab
git-tab-manager
An Atom plugin to close and re-open tabs as you change branches
media-scripts
A collection of scripts and utilities for managing my Plex library. You may or may not find this useful
quicksave
A (very) simple file versioning system -- Migrated to GitLab
canine
A modular, high-performance computing solution to run jobs using SLURM
lapdog
A python module, CLI, and browser-based UI to run jobs outside of Firecloud
rnaseqc
Fast, efficient RNA-Seq metrics for quality control and process optimization
scrinvex
Single Cell RNA Intron-Exon counting
agraubert's Repositories
agraubert/agutil
A collection of python utilities -- Project migrated to gitlab
agraubert/autocomplete-gml
GML autocompletions in atom
agraubert/Beymax
A custom Discord bot and high-level bot API -- Moved to GitLab
agraubert/git-tab-manager
An Atom plugin to close and re-open tabs as you change branches
agraubert/media-scripts
A collection of scripts and utilities for managing my Plex library. You may or may not find this useful
agraubert/quicksave
A (very) simple file versioning system -- Migrated to GitLab
agraubert/RIP-VibeCheck
agraubert/agraubert.github.io
The source code for this website
agraubert/argcomplete
Python and tab completion, better together.
agraubert/bioconda-recipes
Conda recipes for the bioconda channel.
agraubert/civic-client
Web client for CIViC: Clinical Interpretations of Variants in Cancer
agraubert/civic-server
Backend Server for CIViC Project
agraubert/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
agraubert/dalmatian
dalmatian is a collection of high-level companion functions for Firecloud and FISS.
agraubert/discord.py
An API wrapper for Discord written in Python.
agraubert/fiss
FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine
agraubert/graubs.info
A URL shortener and file exchange
agraubert/lapdog
A python module, CLI, and browser-based UI to run jobs outside of Firecloud
agraubert/manifest-bot
A discord bot built to help me track boxes while packing my house. Maybe it'll help you, I dunno
agraubert/miniwdl
A static analysis toolkit for the Workflow Description Language
agraubert/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
agraubert/paramiko
The leading native Python SSHv2 protocol library.
agraubert/phaser
phasing and Allele Specific Expression from RNA-seq
agraubert/pVAC-Seq
A cancer immunotherapy pipeline
agraubert/pvac-seq-client
browser client for the pVAC-Seq project
agraubert/SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
agraubert/ServiceTracker
Source code from v2 of the WULIB service tracker and hardware inventory
agraubert/slurm-gcp
Slurm on Google Cloud Platform
agraubert/starphish-api
Backend API code for starphish.org
agraubert/wolF
Interactively create computational workflows in Python