Pinned Repositories
apparmor-det
Apparmor security profiles
debian-guix
Debian packaging recipe for Guix package manager
django-relationships
Descriptive relationships between auth.users (think facebook friends and twitter followers, plus more)
encode-annex
Helper to create git-annex repositories from ENCODE experiments.
htseq
git-svn checkout of svn://svn.code.sf.net/p/htseq/code/
kamoso
Kamoso - kde tool to take pictures & video with your webcam
qt-gstreamer
Qt Gstreamer 1.0: this is my staging area to send patches to freedesktop
rdfmagic
IPython magic extension to make it easier to query librdf models.
telepathy-gitter
A vague attempt to write a telepathy connetion manager for gitter.
woldlab-rna-seq
ENCODE3/4 bulk (port) and single-cell implementation of an illumina RNA-seq pipleine
detrout's Repositories
detrout/debian-guix
Debian packaging recipe for Guix package manager
detrout/apparmor-det
Apparmor security profiles
detrout/woldlab-rna-seq
ENCODE3/4 bulk (port) and single-cell implementation of an illumina RNA-seq pipleine
detrout/GeorgiScripts
detrout/igvf-seq-spec-demo
Example notebook for creating and attaching seq-spec files to IGVF fastq files.
detrout/mex_gene_archive
Utilities to handle an archive of matrix market exchange count files as frequently generated by single cell gene mappers
detrout/tss-annotation
detrout/all-positive-integers-in-ascending-order
A list of all positive integers in ascending order (incomplete)
detrout/conda-recipes
packaging some software needed for my snakemake workflows that use conda based wrappers
detrout/dask
Parallel computing with task scheduling
detrout/debian-spp
Debian packaging for spp
detrout/encode3-curation
Various work in progress files working on trying to curate our ENCODE data submissions.
detrout/encode4-curation
notes for submiting things for ENCODE4 project
detrout/encode4-rna-wg-paper
Python notebooks supporting ENCODE4 RNA working group paper
detrout/encoded_client
Search and submit to the ENCODE-DCC portal.
detrout/guix-detrout
Staging repository for me to package things I find useful using Guix.
detrout/hello-actions
Repository to investigate github actions
detrout/htsworkflow
Wold lab LIMS
detrout/igvf-curation
detrout/igvf_mice
Database for tracking biosamples and processed result files for our joint UCI/Caltech IGVF project
detrout/LR-splitpipe
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
detrout/mumo
mumo is the Mumble Moderator framework which simplifies development of plugins connecting to a Mumble server via Ice. mumo handles basic ICE connectivity and contains basic module loading and message multiplexing.
detrout/mythtv
The official MythTV repository
detrout/nextcloud-news
:newspaper: RSS/Atom feed reader
detrout/scaqmd_sensor
home-assistant sensor to watch South Coast AQMD's AQI and Forecast
detrout/seqspec
machine-readable file format for genomic library sequence and structure
detrout/snrna_pseudobulk
detrout/TALON
Technology agnostic long read analysis pipeline for transcriptomes
detrout/woldrnaseq-wrappers
Snakemake wrappers used by woldlab-rna-seq project
detrout/y2ave_seqspecs
Work in progress seqspecs for Y2AVE processing for IGVF