bwa-mem
There are 27 repositories under bwa-mem topic.
walaj/SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
kaist-ina/BWA-MEME
BWA-MEME: Faster BWA-MEM2 using learned-index
digo4/Clinical-Genomics
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Sentieon/sentieon-dnaseq
Sentieon DNAseq
nf-core/hgtseq
A pipeline to investigate horizontal gene transfer from NGS data
Sydney-Informatics-Hub/Fastq-to-BAM
Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi
qingxiangguo/Tools-for-Cancer-Genome-Analysis
Installation and usage for various tools for cancer genomics
rpianezza/GenomeDelta
Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads
DKFZ-ODCF/AlignmentAndQCWorkflows
The DKFZ alignment workflow plugin originally developed at the eilslabs
USDA-VS/vSNP3
vSNP -- validate SNPs
cancerit/dockstore-cgpmap
Mapping using PCAP
AmirHoseinSafari/Genotype-collector-and-SNP-dataset-creator
Collecting Genotypes from ENA and make their SNPs
broadinstitute/gatk-bwamem-jni
JNI code for bwa mem
AntoineHo/runGATK
Small GATK alignment and variant calling pipeline using python
asw0049/phdscripts
This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.
loykylewong/bwa-mem-fpga
Fast bwa-mem dna matching algor implemented in system verilog, fully synthesizable.
FaithGriffin/CandidaPhylo
Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.
idrissrasheed/Variant-Calling-Pipeline
Created a pipeline to carry out the alignment of a reference genome to the creation of a variant calling format (VCF).
Morteza1814/PARMIK
PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.
PulmonomicsLab/mcdr-mtb-standalone
Multi-class classification of drug resistance in MTB clinical isolates
PulmonomicsLab/mcdr-mtb-standalone-v2
Multi-class classification of drug resistance in MTB clinical isolates
cnr-ibba/nf-resequencing-mem
Nextflow resequencing pipeline with bwa-mem and freebayes
crisprVerse/Rbwa
R wrapper for BWA-backtrack and BWA-MEM aligners
Grelot/reserveBenefit--snpsdata_analysis
Codes i wrote for the paper "genomic resources for Mediterranean fishes"
npanuhin/BIOCAD-BWA
The second part of https://github.com/npanuhin/BIOCAD