rob-p
Working on algorithms, data structures and inference for high-throughput genomics (and other things I find interesting). I prefer my types static!
University of MarylandCollege Park, MD
Pinned Repositories
bibget
Generate BibTex entry from a DOI. Written in Rust and based on the doi2bib crate.
BooM
A hash map using the BooPHF perfect hash function
carlworld-beamer-slide-theme
Carl Compliant Beamer slide theme
CMSC858D
Feature rich Jekyll template for academic course websites
cpp11fun
A small set of examples demonstrating features of C++11
CSE549F17
FQFeeder
Self-contained, multi-threaded fasta/q parser
genomap
A Rust library for storing generic genomic data by sorted chromosome name
mcflow
An implementation of implicit curvature flow as described in "Implicit Fairing of Irregular Meshes using Diffusion and Curvature Flow" by Desbrun et al.
ScalaIntro
A small set of Scala examples & links for a brief Scala introduction given at UMD
rob-p's Repositories
rob-p/FQFeeder
Self-contained, multi-threaded fasta/q parser
rob-p/bibget
Generate BibTex entry from a DOI. Written in Rust and based on the doi2bib crate.
rob-p/genomap
A Rust library for storing generic genomic data by sorted chromosome name
rob-p/ANTISEQUENCE
Rust library for processing sequencing reads.
rob-p/CMSC423_F22_A1_sample
rob-p/ggcat
Compacted and colored de Bruijn graph construction and querying
rob-p/libdivsufsort
A lightweight suffix-sorting library
rob-p/metagraph
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
rob-p/CMSC423_F22_A4
rob-p/CMSC423_F22_A5
rob-p/CMSC423_F22_Project2_Sample
rob-p/cmsc423_f22_project3_cpp_sample
rob-p/cmsc423_f22_project3_java_sample
rob-p/CMSC423_F22_Project3_sample_data
rob-p/config_files
rob-p/cpp_sa_starter_proj
rob-p/cuttlefish
Building the compacted de Bruijn graph efficiently from references or reads.
rob-p/essentials
Essential C++ utilities.
rob-p/fork-test
rob-p/granges
A Rust library and command line tool for working with genomic ranges and their data.
rob-p/kmers
A bit-packed k-mer representation (and relevant utilities) for rust
rob-p/LaPreprint
📝 A nicely formatted LaTeX preprint template
rob-p/libdivsufsort-rs
A rust wrapper for libdivsufsort
rob-p/Mastodon-Bioinformatics
Most simple webapp to bulk follow bioinformatics accounts on Mastodon.
rob-p/path-tools
A simple rust crate for more conveniently performing some operations with paths
rob-p/pthash
Fast and compact minimal perfect hash functions in C++.
rob-p/split2samples
BD rhapsody sample splitting preprocessing
rob-p/sshash
A compressed, associative, exact, and weighted dictionary for k-mers.
rob-p/test-ureq
rob-p/tximport
Import and summarize transcript-level estimates for gene-level analysis