rob-p
Working on algorithms, data structures and inference for high-throughput genomics (and other things I find interesting). I prefer my types static!
University of MarylandCollege Park, MD
Pinned Repositories
bibget
Generate BibTex entry from a DOI. Written in Rust and based on the doi2bib crate.
BooM
A hash map using the BooPHF perfect hash function
cargo-sanitize
carlworld-beamer-slide-theme
Carl Compliant Beamer slide theme
CMSC858D
Feature rich Jekyll template for academic course websites
cpp11fun
A small set of examples demonstrating features of C++11
CSE549F17
FQFeeder
Self-contained, multi-threaded fasta/q parser
mcflow
An implementation of implicit curvature flow as described in "Implicit Fairing of Irregular Meshes using Diffusion and Curvature Flow" by Desbrun et al.
ScalaIntro
A small set of Scala examples & links for a brief Scala introduction given at UMD
rob-p's Repositories
rob-p/FQFeeder
Self-contained, multi-threaded fasta/q parser
rob-p/bibget
Generate BibTex entry from a DOI. Written in Rust and based on the doi2bib crate.
rob-p/cargo-sanitize
rob-p/genomap
A Rust library for storing generic genomic data by sorted chromosome name
rob-p/minimap2-rs
Rust bindings to minimap2 library
rob-p/simple_btree_sa
rob-p/ANTISEQUENCE
Rust library for processing sequencing reads.
rob-p/ggcat
Compacted and colored de Bruijn graph construction and querying
rob-p/libdivsufsort
A lightweight suffix-sorting library
rob-p/metagraph
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
rob-p/test_sanitize_workflow
just for testing
rob-p/astrovim_config
rob-p/CMSC701-Project
Class project for CMSC701
rob-p/config_files
rob-p/cpp_sa_starter_proj
rob-p/fork-test
rob-p/git-archive-all.sh
A bash shell script wrapper for git-archive that archives a git superproject and its submodules, if it has any.
rob-p/granges
A Rust library and command line tool for working with genomic ranges and their data.
rob-p/kmers
A bit-packed k-mer representation (and relevant utilities) for rust
rob-p/libdivsufsort-rs
A rust wrapper for libdivsufsort
rob-p/libradicl
rob-p/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
rob-p/minimap2-sys
separate repo for minimap2-sys
rob-p/path-tools
A simple rust crate for more conveniently performing some operations with paths
rob-p/pthash
Fast and compact minimal perfect hash functions in C++.
rob-p/sendable_swapvec
A Rust Vector which swaps to disk based on given parameters
rob-p/sshash
A compressed, associative, exact, and weighted dictionary for k-mers.
rob-p/test-ureq
rob-p/test_submodule_publish
rob-p/tximport
Import and summarize transcript-level estimates for gene-level analysis