sequence-alignments
There are 28 repositories under sequence-alignments topic.
tanghaibao/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
seqan/seqan
SeqAn's official repository.
walaj/SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
debbiemarkslab/plmc
Inference of couplings in proteins and RNAs from sequence variation
drostlab/orthologr
Genome wide orthology inference and dNdS estimation
pymodproject/pymod
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
ranwez/MACSE_V2_PIPELINES
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.
humanlongevity/tredparse
TREDPARSE: HLI Short Tandem Repeat (STR) caller
laurentnoe/yass
genomic alignment similarity search tool
benhid/Sequoya
Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics
wafflespeanut/nucleic-acid
BWT, FM-index and bits vector for analyzing DNA sequence data.
benhid/NeedlemanWunschPy
This code is meant for educational purposes only! Sequence alignment in Python 3.x using Needleman–Wunsch algorithm. Reference code from TyMA (2017 - University of Málaga)
mohammadtavakoli78/Bioinformatics
This is projects of Bioinformatics
akiomiyao/ped
Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
ggirelli/ood-fish
Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)
jeanmanguy/multi-seq-align
A crate to manipulate multiple sequences alignments in Rust.
josejimenezluna/odseq
Outlier detection in multiple sequence alignment
laurentnoe/iedera
subset and spaced seed design tool
kyungtaekLIM/arelia
Reliability Scoring and Masking of Multiple Sequence Alignments
nurhafiza/FADSA
A New Hyper-Heuristic Algorithm (FADSA) for Gene Sequence Assembly
kevinah95/bmc-sequence-alignment
El presente trabajo muestra la aplicación de algoritmos de alineación de secuencias conocidos como needleman-wunsch (global), smith-waterman (local) y semi-global con sus variantes (kband o afín de costo por gap).
nurhafiza/DSA
Differential Search Algorithm for Gene Sequence Assembly
nurhafiza/FA
Firefly Algorithm for Gene Sequence Assembly
salilab/mdt
Generate frequency tables used by Modeller and IMP.
kyungtaekLIM/seqlim
Easy Manipulation of Multiple Sequence Alignments (Concatenation and Format Conversion)
ggirelli/seq-lib-gg
Base librarys for sequencing data analysis.
weng-lab/bam-aggregate-task
Kotlin task for aggregating reads from a BAM file across a set of genomic regions