ranwez/MACSE_V2_PIPELINES

This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.

Shell

Issues

java.lang.StringIndexOutOfBoundsException: String index out of range:
#12 opened 3 months ago by josieparis
2
Am I reaching the limits of omm-macse?
#11 opened 8 months ago by KPHendriks
3
Issue with prefiltering
#10 opened a year ago by rsiani
2
file does not exist
#2 opened 4 years ago by aguang
9
handling of degenerate nucleotides in amino acid and nucleotide output files
#9 opened a year ago by csgenomics-admin
4
Can't seem to find the .sif file
#6 opened 2 years ago by ahmedelbassiouny
3
How to specify the reading frame in MACSE
#8 opened 2 years ago by Hassan-1991
2
Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
#7 opened 2 years ago by simone-says
4
Minimum number of threads needed per MACSE job
#4 opened 2 years ago by csgenomics-admin
1
which program is parameter -alphabet_AA applicable?
#3 opened 2 years ago by csgenomics-admin
4
No FS option
#5 opened 2 years ago by asumann
2
specifying different mafft options in OMM_MACSE
#1 opened 4 years ago by aguang
2