Issues
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- 4
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Issues with nimble test
#78 opened by lucia-ramirez - 6
Modifying GT from ivcf and write to ovcf for multiple pairs of inputs and outputs
#77 opened by ruqianl - 2
Is there any way to get the variant's row index when using the iterator query()
#76 opened by ruqianl - 1
Get list of INFO and FORMAT keys from Header
#74 opened by edg1983 - 0
- 3
- 1
Version tag in 0.3.13 is wrong
#71 opened by Benjamin-Lee - 3
No public facing method for closing Fai file
#70 opened by NatPRoach - 2
- 6
Static binary not working from AMD nodes
#66 opened by telatin - 3
Version bump
#65 opened by andreas-wilm - 8
- 3
Write to bam/cram instead of sam
#64 opened by mflevine - 7
Vcf FORMAT missing values.
#57 opened by cassimons - 3
hts-1.10 assertion failed
#62 opened by slw287r - 3
Multiple iterators with items*(v:VCF)
#60 opened by cvlvxi - 2
VCF: Clear all INFO field
#59 opened by cvlvxi - 3
- 13
fetch contigs and lengths
#51 opened by danielecook - 2
Get query length from CIGAR?
#52 opened by sdwfrost - 1
handle htslib 1.10
#53 opened by brentp - 3
did recent change break nim CI ?
#56 opened by timotheecour - 8
How to build new variants?
#55 opened by kmhernan - 8
static builder failed
#49 opened by lch14forever - 6
"Error: unhandled exception: invalid bgzf file [ValueError]" on an S3 bam file that samtools-1.9 can view.
#48 opened by splichte - 2
error opening index
#38 opened by pb-cdunn - 4
Request: addition to wiki/Examples
#43 opened by andreas-wilm - 1
set tag/ append tag
#42 opened by ruqianl - 3
modify qname
#41 opened by ruqianl - 5
conditional iterator
#37 opened by danielecook - 15
HTS-lib dependency
#31 opened by jaudoux - 3
Iteration without for loop
#34 opened by jaudoux - 7
Write new VCF files
#30 opened by mflevine - 1
Undeclared routine: `aux`
#29 opened by raivivek - 5
- 1
Undocumented and possibly broken functions
#26 opened by sodic - 5
- 4
- 14
Tests crash
#20 opened by pb-cdunn - 1
does not work with extra fields of type 'A'
#19 opened by nellore - 5
Does this library work with SAM files?
#17 opened by nellore - 2
- 4
- 2
Consider adding additional getters in BAM
#15 opened by nh13 - 1
Question: what is the SAM_RGAUX flag?
#13 opened by nh13 - 2