nellore
Computational scientist. Alternate handles: verve, buci.
Oregon Health and Science UniversityPortland, Oregon
Pinned Repositories
awsbdb
Blog post for AWS on Rail-RNA
burn.fm
Ad-free YouTube playlists circa 2012 ... NO NOW ASPIRATIONALLY OGOGOGOGOGOGOGO
intropolis
Exon-exon splice junctions across SRA
nitwit
Scan Twitter or Github for available handles
rail
Scalable RNA-seq analysis
rail-dbgap
Protocol for analyzing dbGaP-protected data from SRA with Amazon Elastic MapReduce
region_matrix
Tool for writing matrix of AUCs of indexed BAMs in regions specified by BED
runs
Scripts for reproducing analyses of large RNA-seq datasets
shiv
basically the manhattan project
vickitrix
Trigger crypto trades on GDAX with the Twitter stream
nellore's Repositories
nellore/rail
Scalable RNA-seq analysis
nellore/intropolis
Exon-exon splice junctions across SRA
nellore/vickitrix
Trigger crypto trades on GDAX with the Twitter stream
nellore/runs
Scripts for reproducing analyses of large RNA-seq datasets
nellore/rail-dbgap
Protocol for analyzing dbGaP-protected data from SRA with Amazon Elastic MapReduce
nellore/digitalocean-duffel
Creates permalinks to real locations of data resources and logs accesses
nellore/region_matrix
Tool for writing matrix of AUCs of indexed BAMs in regions specified by BED
nellore/shiv
basically the manhattan project
nellore/awsbdb
Blog post for AWS on Rail-RNA
nellore/bigraph-schema
compositional type schemas
nellore/bowtie2
A fast and sensitive gapped read aligner
nellore/Cookiecutter
nellore/deidentify
Deidentifies LABS consortium data
nellore/digitalocean-recount
nellore/docs.rail.bio
Documentation for Rail-RNA (http://rail.bio)
nellore/duffel
Flask backend for routing permalinks to direct URIs of data objects
nellore/fgfr
A closer look at correlates of a missense mutation in FGFR4
nellore/hts-nim
nim wrapper for htslib for parsing genomics data files
nellore/locfdr-python
Python implementation of Efron, Turnbull, and Narasimhan's R function locfdr v1.1-7, which computes local false discovery rates. See http://cran.r-project.org/web/packages/locfdr/ for more information.
nellore/mr1
explores alternative splicing of MR1 across GTEx
nellore/nellore.github.io
nellore/neocompare
scripts that explore Kahles et al. neojunctions
nellore/omfgene
discordant alignment filter
nellore/process-bigraph
nellore/recount-landing
recount landing page
nellore/recount2.rail.bio
Recount2 website: URLs for gene counts / coverage bigWigs for human SRA RNA-seq
nellore/recountmethylation
Utilities for analyzing Recount Methylation database files.
nellore/ssec2
Stupid Simple Elastic Compute Cloud
nellore/strandedness
For analyzing RNA-seq data for stranded or unstranded experimental protocol.
nellore/struct.nim
Python-like 'struct' for Nim