nellore

nellore's Stars

• exaloop/codon

  A high-performance, zero-overhead, extensible Python compiler using LLVM

  Language:C++15.3k137428525

• plasma-umass/scalene

  Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python with AI-powered optimization proposals

  Language:Python12.4k92477402

• synercys/annotated_latex_equations

  Examples of how to create colorful, annotated equations in Latex using Tikz.

  Language:TeX3.8k383216

• Zeal-Operating-System/ZealOS

  The Zeal Operating System is a modernized fork of the 64-bit Temple Operating System, TempleOS.

  Language:HolyC1.6k286275

• DLYuanGod/TinyGPT-V

  TinyGPT-V: Efficient Multimodal Large Language Model via Small Backbones

  Language:Python1.3k193676

• motiwari/BanditPAM

  BanditPAM C++ implementation and Python package

  Language:C++647920238

• vacuumlabs/adalite

  A lightweight web wallet for Cardano cryptocurrency with Trezor, Ledger and BitBox02 support. Please note that the only valid domain for our wallet is adalite.io

  Language:TypeScript2345054549

• theahura/shoot-the-messenger

  Script to auto-unsend all messages from a facebook messenger chat

  Language:JavaScript1921411327

• BasisResearch/chirho

  An experimental language for causal reasoning

  Language:Python1801121612

• ChristopherWilks/megadepth

  BigWig and BAM utilities

  Language:C++924159

• gogetdata/ggd-recipes

  conda recipes for genomic data

  Language:Shell85112612

• nellore/rail

  Scalable RNA-seq analysis

  Language:Python73115311

• jambler24/GenGraph

  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes

  Language:Python5132116

• nellore/intropolis

  Exon-exon splice junctions across SRA

  391659

• LieberInstitute/recount3

  Explore and download data from the recount3 project

  Language:R318544

• namphuon/ViFi

  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.

  Language:Python2742618

• pdxgx/neoepiscope

  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data

  Language:Python26151317

• StephanHolgerD/DrukBam

  Language:Python20542

• alshai/rowbowt

  run-length BWT tools for genomic sequences

  Language:C++18221

• langmead-lab/monorail-external

  examples to run monorail externally

  Language:Shell153335

• pdxgx/pepsickle

  A context aware tool for proteasomal cleavage predictions

  Language:Python10742

• metamaden/recountmethylation

  Utilities to access and analyze harmonized databases of public DNAm arrays from GEO.

  Language:R93112

• pdxgx/covid19

  covid19 exploration

  Language:R9714

• dominikkempa/lz77-to-slp

  Fast and space-efficient conversion from the LZ77 parsing to a grammar

  Language:C++6112

• leekgroup/locfdr-python

  Python implementation of Efron, Turnbull, and Narasimhan's R function locfdr v1.1-7, which computes local false discovery rates. See http://cran.r-project.org/web/packages/locfdr/ for more information.

  Language:Python6329

• JulianneDavid/shared-cancer-splicing

  Code for reproducing analyses and figures for shared alternative cancer splicing paper

  Language:Python4342

• nelloreward/pkl

  Software for generating arbitrary-length analogs to de Bruijn sequences

  Language:Python4101

• pdxgx/ri-tests

  Supporting materials for "Retained introns in long RNA-seq reads are not reliably detected in sample-matched short reads"

  Language:R4200

• metamaden/recountmethylation.pipeline

  Functions and utilities for pipeline to compile and harmonize public GEO DNA methylation array data and sample metadata. For implementation, see the `recountmethylation_instance` resource.

  Language:R2201

• metamaden/recountmethylation_instance

  Synchronize public DNAm array data. This resource provides a full Snakemake workflow to download, harmonize, and compile IDAT-derived DNAm and SOFT-derived sample metadata from GEO experiments.

  Language:Shell1400