Issues
- 8
Difficulties downloading data
#55 opened by pclavell - 1
database disk image is malformed
#54 opened by EperLuo - 2
- 6
[BUG] Error in `collect()`:
#39 opened by ndaniel - 5
[BUG] Missing metadata in `read_metadata`
#5 opened by ben-heil - 3
- 3
[BUG] recount3::create_rse_manual does not work if recount3 namespace is not attached
#7 opened by mschubert - 8
- 1
sra_attributes : sra.run_alias explanation
#10 opened by PinaColadast - 3
[BUG] SRP167447's suspiciously large library sizes (raw counts, by gene, gencode_v29)
#12 opened by johnmoll - 5
- 6
GTEx BLOOD VESSEL study TPM failing
#15 opened by MahmoudZidan96 - 0
Update the CITATION
#17 opened by lcolladotor - 5
Consider releasing the transcript counts
#18 opened by lcolladotor - 13
- 2
hg19 Reference Build Option
#20 opened by aobermayer4 - 2
- 8
Data unavailable right now
#22 opened by lcolladotor - 11
recount3_url' is not a valid supported URL
#23 opened by xiangwei6963 - 4
is recount3 server down?
#26 opened by ahdee - 1
- 2
Error: 'recount3_url' is not a valid supported URL when I run "human_projects <- available_projects()"
#31 opened by bitmman - 2
- 1
- 0
use metadata to select samples from rse
#37 opened by talkhanz - 2
Error in match.arg(project_home)
#38 opened by kayserb - 1
Unable to access or download data
#52 opened by MB571 - 0
Switch to using rlang and cli
#51 opened by lcolladotor - 0
Add more data to recount3
#50 opened by lcolladotor - 0
- 0
Short videos + guide collating them
#48 opened by lcolladotor - 0
- 0
Create guides for GTEx and TCGA data
#46 opened by lcolladotor - 0
- 0
- 0
Add recount-brain collection to recount3
#43 opened by lcolladotor - 0
Upload recount3 data to AnVIL
#42 opened by lcolladotor - 0
Add support for data hosted in AnVIL
#41 opened by lcolladotor - 2
Identify the label in the datasets
#33 opened by kolskydor - 3
[Feature Request] Restore information from Matrix Market files in recount3
#40 opened by jiapeiyuan17 - 2
RNAseq datasets unavailable
#13 opened by danielemalpetti - 2
recount::getTPM(rse) method
#30 opened by SoniaRuiz - 0
Error when loading an SRA project - "'NA' indices are not (yet?) supported for sparse Matrices"
#34 opened by aobermayer4 - 2
[BUG] different row counts implied by arguments error at expand_sra_attributes()
#35 opened by ivokwee - 0
[FEATURE] Subsetting SRA projects by samples prior to making the RangedSummarizedExperiment object
#11 opened by schelhorn - 0
- 2
deseq 2 with RSE
#25 opened by lfperales - 40
[BUG] Is data server functional?
#29 opened by adc0032 - 1
TCGA data: how do you generate the metadata?
#24 opened by bandrewfox - 2
Combining multiple RSE
#8 opened by harish0201