Pinned Repositories
All-Scripts
Analyses_Pipelines
Analyses pipelines that I use for my work
BUG_Orthofinder
A repo for Orthofinder in CGRB BUG
Enrichment-Analysis
R codes I uam using for getting from RNA-seq raw count to Pathways
Genome_assembly_scripts
Approaches used by me to assemble genome, remove duplicates, scaffold, fill gaps, polish and annotate
pHASE-Stitcher
a python program to stitch the ReadBack phased haplotypes in F1 hybrids.
harish0201's Repositories
harish0201/Analyses_Pipelines
Analyses pipelines that I use for my work
harish0201/BUG_Orthofinder
A repo for Orthofinder in CGRB BUG
harish0201/Enrichment-Analysis
R codes I uam using for getting from RNA-seq raw count to Pathways
harish0201/Genome_assembly_scripts
Approaches used by me to assemble genome, remove duplicates, scaffold, fill gaps, polish and annotate
harish0201/pHASE-Stitcher
a python program to stitch the ReadBack phased haplotypes in F1 hybrids.
harish0201/All-Scripts
harish0201/Command-line-text-processing
From finding text to search and replace, from sorting to beautifying text and more
harish0201/configs_Arch
harish0201/cs-video-courses
List of Computer Science courses with video lectures.
harish0201/General_Scripts
harish0201/genome-assembly-workshop-2023
harish0201/genome-scripts
Genome Scripts used in fungal comparative genomics
harish0201/GGisy
Genome-Genome circle synteny
harish0201/human_known_vars_gatk_qsr
harish0201/JupiterPlot
A Circos-based tool to visualize genome assembly consistency
harish0201/linuxupskillchallenge
Learn the skills required to sysadmin a remote Linux server from the commandline.
harish0201/metamplicon
Scripts to work on Amplicon sequencing
harish0201/Nextflow_cheatsheet
Useful tips to get started with Nextflow
harish0201/NGS_analysis
My python scripts for Peanut sequencing project
harish0201/pangenome-selection
A repository as a Supplementary Methods of Moulana et al., 2019
harish0201/phase-Extender
A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.
harish0201/phaseRB
A tool for running readbackphasing on VCF using BAM (reference genome aligned genome or RNAseq reads).
harish0201/qiime2_ASVworkflow_v8
harish0201/rhcsa-practice-questions
RHCSA practice questions for version 7/8
harish0201/sgtr
Visualize population genomics analyses results in R
harish0201/smallRNADeets
Details for smallRNA work: might include gffs and other things etc
harish0201/snakemake-exome
Snakemake workflow for processing exome data.
harish0201/sysadminshow
Code for Sysadmin Show Podcast
harish0201/VCF-Simplify
A python parser to simplify and build the VCF (Variant Call Format).