Pinned Repositories
bionitio
Demonstrating best practices for bioinformatics command line tools
biomojify
Convert bioinformatics files to an emoji format.
fastqe
FASTQ sequence quality visualisation with Emoji
10_simple_rules_analysis
Python scripts used to produce figures for "'Ten Simple Rules for Writing a PLOS Ten Simple Rules Article"
biotool-initial
Template bioinformatics script in various languages based on "Ten recommendations for creating usable bioinformatics command line software" by Torsten Seemann (http://www.gigasciencejournal.com/content/2/1/15)
data-shell
Software Carpentry introduction to the shell for novices.
fastqe
Redirection to the new FASTQE repo.
Mighty-Morphin-FASTA-Files
Paper and source for AB3ACBS 2016 presentation: Mighty Morphin FASTA Files
Toblerone
TobleroneApp
Desktop app incorporating https://github.com/oshlack/toblerone
lonsbio's Repositories
lonsbio/Mighty-Morphin-FASTA-Files
Paper and source for AB3ACBS 2016 presentation: Mighty Morphin FASTA Files
lonsbio/fastqe
Redirection to the new FASTQE repo.
lonsbio/cazy-parser
A way to extract specific information from CAZy
lonsbio/phd-thesis-template
Ph.D Thesis Template -- LaTeX -- University of Melbourne
lonsbio/ALLSorts
ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.
lonsbio/bioconda-recipes
Conda recipes for the bioconda channel.
lonsbio/Bioinformatics-Conference-Bingo
Modified for bioinformatics in an Australian context
lonsbio/Biostrings
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/Biostrings.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=Biostrings.
lonsbio/biotool
Proverbial biotool implemented in multiple languages
lonsbio/blog.lonsbio.com.au
Redirects to main repo
lonsbio/code-review-c
lonsbio/DWGSIM
Whole Genome Simulator for Next-Generation Sequencing
lonsbio/ExpansionHunterPlus
lonsbio/git-novice
Software Carpentry introduction to Git for novices.
lonsbio/git_shell_example
Git with Unix Shell scripts
lonsbio/lonsbio.com.au
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
lonsbio/LSPFam
Leaderless Secretory Protein tool
lonsbio/planets
SWC example repository
lonsbio/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
lonsbio/python-novice-gapminder
Introduction to Python for non-programmers using gapminder data
lonsbio/r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
lonsbio/R_git_example
Git with simple RStudio script
lonsbio/RepeatChaser
lonsbio/rust-debruijn
De Bruijn graphs in Rust
lonsbio/slackbots-for-research
A collection of Slackbot scripts for research groups using http://Slack.com
lonsbio/STRetch
Method for detecting pathogenic STR expansions from next-gen sequencing data
lonsbio/varnish
Template for pkgdown site
lonsbio/workbench-template
Test of The Carpentries workbench template
lonsbio/wrangling-genomics
Data Wrangling and Processing for Genomics
lonsbio/xenomapper
A utility for splitting mixed origin NGS reads