adc0032
Postdoctoral Fellow, University of Alabama at Birmingham
University of Alabama at BirminghamAlabama
Pinned Repositories
adc0032.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
au-bootcamp-git-intro
Git introduction for Auburn University Bioinformatics Bootcamp
bash_debugger_homework_4
bio_scripting_homework_3
Homework 3 for Scripting for Biologists course at Auburn University
BLAST_script
dpulicaria_genomics
This repository contains all scripts used to perform reference-guided genomic assembly from paired end sequence reads and screen for contaminants as was done in Clark et al. 2021. These scripts are designed to assemble the genomes for two strains of Daphnia pulicaria using Daphnia pulex (PA42) as a reference. This repository presents a simplified workflow/pipeline to run these analyses on a supercomputer and are separated into two parts, reference-guided genomic assembly and contamination screening.
ensleycochrist
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
genomics_general
General tools for genomic analyses.
SimpleRGraphs
Tutorial Inspired by Frank McCowan's (https://sites.harding.edu/fmccown/r/) website for Auburn University's Intro to Computational Biology
R-Mini-Course
This mini course will get you started in R and the RStudio Environment. It is meant to be self-guided as you watch videos and work through activities to learn R.
adc0032's Repositories
adc0032/dpulicaria_genomics
This repository contains all scripts used to perform reference-guided genomic assembly from paired end sequence reads and screen for contaminants as was done in Clark et al. 2021. These scripts are designed to assemble the genomes for two strains of Daphnia pulicaria using Daphnia pulex (PA42) as a reference. This repository presents a simplified workflow/pipeline to run these analyses on a supercomputer and are separated into two parts, reference-guided genomic assembly and contamination screening.
adc0032/ensleycochrist
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
adc0032/genomics_general
General tools for genomic analyses.
adc0032/adc0032.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
adc0032/au-bootcamp-git-intro
Git introduction for Auburn University Bioinformatics Bootcamp
adc0032/bash_debugger_homework_4
adc0032/SimpleRGraphs
Tutorial Inspired by Frank McCowan's (https://sites.harding.edu/fmccown/r/) website for Auburn University's Intro to Computational Biology
adc0032/DaphniaGenomics19
testing out github with Bailey
adc0032/decoupleR_manuscript
Code to reproduce the results from decoupleR's manuscript
adc0032/decoupleRBench
Package to benchmark methods from decoupleR
adc0032/GnGG_setup
Grab-N-Go Genomes Setup Information
adc0032/GrabNGoGenomes
Scripting for Biologists
adc0032/homework_6
Homework 6 for Scripting for Biologists
adc0032/iTerm2-Color-Schemes
Over 230 terminal color schemes/themes for iTerm/iTerm2. Includes ports to Terminal, Konsole, PuTTY, Xresources, XRDB, Remmina, Termite, XFCE, Tilda, FreeBSD VT, Terminator, Kitty, MobaXterm, LXTerminal, Microsoft's Windows Terminal, Visual Studio, Alacritty
adc0032/learnAdvR
adc0032/python-translation-exercise
Learning Python by translating RNA sequences.
adc0032/python-translation-project
Learning Python by translating RNA sequences
adc0032/romim
R package for querying the OMIM database
adc0032/rooted_bham
Community Project featuring local Birmingham Business Owners. Built from: »Feeling Responsive« is a free flexible theme for Jekyll built on Foundation framework.
adc0032/sample_repo
sample repository for course github demos
adc0032/SceloporusGenomics
adc0032/ScriptingProject
adc0032/stats_club
Code from monthly stats club in the Lasseigne Lab
adc0032/stringtie
Transcript assembly and quantification for RNA-Seq
adc0032/UtilityBloodTranscriptomes
adc0032/Version_Ctrl_Lab
This lab accompanies a lecture on Version Control and Reproducibility created for the Fall 2020 Intro to Computational Biology Course at Auburn University
adc0032/VersionControl
adc0032/visualize_variant_annotations
Scripts for generating tables and plots from VCF files using GATK and VCFtools for quality filtering and data summaries
adc0032/Wb_sWGA
scripts for analysis of sWGA genome data generated for Wb
adc0032/WILD7150
Home for an R data package with ecology and wildlife datasets from Dr. Todd Steury's WILD7150 at Auburn University.