adc0032
Postdoctoral Fellow, University of Alabama at Birmingham
University of Alabama at BirminghamAlabama
Pinned Repositories
adc0032.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
au-bootcamp-git-intro
Git introduction for Auburn University Bioinformatics Bootcamp
bash_debugger_homework_4
bio_scripting_homework_3
Homework 3 for Scripting for Biologists course at Auburn University
BLAST_script
dpulicaria_genomics
This repository contains all scripts used to perform reference-guided genomic assembly from paired end sequence reads and screen for contaminants as was done in Clark et al. 2021. These scripts are designed to assemble the genomes for two strains of Daphnia pulicaria using Daphnia pulex (PA42) as a reference. This repository presents a simplified workflow/pipeline to run these analyses on a supercomputer and are separated into two parts, reference-guided genomic assembly and contamination screening.
ensleycochrist
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
genomics_general
General tools for genomic analyses.
SimpleRGraphs
Tutorial Inspired by Frank McCowan's (https://sites.harding.edu/fmccown/r/) website for Auburn University's Intro to Computational Biology
R-Mini-Course
This mini course will get you started in R and the RStudio Environment. It is meant to be self-guided as you watch videos and work through activities to learn R.
adc0032's Repositories
adc0032/bio_scripting_homework_3
Homework 3 for Scripting for Biologists course at Auburn University
adc0032/BLAST_script
adc0032/blobology
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)
adc0032/Genome-Script-in-Full
adc0032/random-scripts
Miscellaneous scripts I find useful
adc0032/scripting_for_biologists
Repo for all things homework and coding practice for course (Scripting for Biologists-Sp19) at Auburn University