Pinned Repositories
awesome_bioinformatics_consultants
List of Consultants/Companies that provide bioinformatic solutions / services
awesome_genome_browsers
biowulf2-bin
~/bin on biowulf2.nih.gov
eyeIntegration_app
Shiny code to run eyeIntegration on EiaD data
NGS_genotype_calling
scEiaD
Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
scripts
Scripts to do little jobs
SeeGEM
Interactive table from gemini output
unified_gene_expression
Meta-analyze and collate genome-wide gene expression from eye tissues
variant_prioritization
Workflows taking Exome/WGS fastq files to prioritized variants
davemcg's Repositories
davemcg/scEiaD
Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
davemcg/scripts
Scripts to do little jobs
davemcg/eyeIntegration_app
Shiny code to run eyeIntegration on EiaD data
davemcg/EiaD_build
Snakemake pipeline to create EiaD dataset for eyeIntegration
davemcg/OGVFB_RNAseq
Generic RNA-seq quant for OGVFB group
davemcg/plaeApp
davemcg/variant_prioritization
Workflows taking Exome/WGS fastq files to prioritized variants
davemcg/NGS_genotype_calling
davemcg/Snakerail
davemcg/metamoRph
davemcg/2024_04_20_NEI_Vision_Course
davemcg/aaaView
davemcg/ahp_rna
davemcg/cellmer
davemcg/cellqc
davemcg/chick_analysis_collab
davemcg/CNC
davemcg/epigenetic_eye
davemcg/eyeMarkers
Lists of genes that mark different cells populations in mammalian eyes
davemcg/geyser
davemcg/ipsc_rpe_atac
Hufnagel Lab
davemcg/metaRPE
Compilation of RPE transcriptomes
davemcg/notes
davemcg/OGVFB_CRISPR_WGS
Workflow to assess CRISPR targetting with WGS
davemcg/phylogeny
davemcg/plaeApp_manuscript
davemcg/sc_mouse_OFC_e11
davemcg/scEiaD_modeling
davemcg/scEiaD_quant
Sample Level Quantification for scEiaD Downstream Use
davemcg/UP_Ward5
code base to track changes to ward5 distill blog