/OGVFB_RNAseq

Generic RNA-seq quant for OGVFB group

Primary LanguageR

OGVFB_RNAseq

Generic RNA-seq quant for OGVFB group

Usage (bulk)

  1. Copy config.yaml to your directory and create a sample <-> fastq file table (tab separated, no columns)
  2. Run: sbatch --time=8:00:00 ~/git/OGVFB_RNAseq/Snakemake.wrapper.sh config.yaml
  3. Generic analysis template

Usage (single cell)

  1. Copy (and edit) configSC.yaml to your directory and create sample_info.csv
  2. fastq files in the fastq folder
  3. Run: sbatch --time=16:00:00 ~/git/OGVFB_RNAseq/SnakemakeSC.wrapper.sh configSC.yaml ~/git/OGVFB_RNAseq/clusterSC.json
  4. Generic analysis template