Generic RNA-seq quant for OGVFB group
- Copy config.yaml to your directory and create a sample <-> fastq file table (tab separated, no columns)
- Run:
sbatch --time=8:00:00 ~/git/OGVFB_RNAseq/Snakemake.wrapper.sh config.yaml
- Generic analysis template
- Copy (and edit) configSC.yaml to your directory and create sample_info.csv
- fastq files in the
fastq
folder - Run:
sbatch --time=16:00:00 ~/git/OGVFB_RNAseq/SnakemakeSC.wrapper.sh configSC.yaml ~/git/OGVFB_RNAseq/clusterSC.json
- Generic analysis template