Pinned Repositories
awesome_bioinformatics_consultants
List of Consultants/Companies that provide bioinformatic solutions / services
awesome_genome_browsers
biowulf2-bin
~/bin on biowulf2.nih.gov
eyeIntegration_app
Shiny code to run eyeIntegration on EiaD data
NGS_genotype_calling
scEiaD
Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
scripts
Scripts to do little jobs
SeeGEM
Interactive table from gemini output
unified_gene_expression
Meta-analyze and collate genome-wide gene expression from eye tissues
variant_prioritization
Workflows taking Exome/WGS fastq files to prioritized variants
davemcg's Repositories
davemcg/awesome_genome_browsers
davemcg/awesome_bioinformatics_consultants
List of Consultants/Companies that provide bioinformatic solutions / services
davemcg/davemcg.github.io
davemcg/Distill
davemcg/eyeIntegration_v1_app_manuscript
davemcg/NIH-NEI-David-McGaughey
Data Carpentry Course. Tips for organizing research
davemcg/NIH-NINDS-Carolina
Data Carpentry Course. Tips for organizing research
davemcg/2019-05-01-NIH-Library-Data-Carpentry-Genomics
Source code for 2019-05-01 NIH Library DC Genomics Workshop
davemcg/2019-06-18-Data-Carpentry-NEI
davemcg/census_UP
davemcg/eyeIntegration_DNTx
Human Eye De Novo Transcriptomes
davemcg/Gekko_lygodactylus_TX_ome
davemcg/harmony
Scalable integration of single cell RNAseq data for batch correction and meta analysis
davemcg/ipsc_rpe_epigenomes
davemcg/kallistobustools
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
davemcg/mac_setup
davemcg/MD_ZIP_LEVEL_COVID_APP
davemcg/ocular_transcriptomes_paper
davemcg/OGVFB-David
Tips for organizing research
davemcg/OGVFB-Ehsan
Tips for organizing research - Data Carpentry Workshop
davemcg/reshape_eye
davemcg/reviz
Lightweight visualization for recount3
davemcg/rico_ATAC
davemcg/rigraph
igraph R package
davemcg/rmda11y
davemcg/rr-version-control-demo
A repo for students to fork and clone as part of the version control lesson
davemcg/scEiaD_manuscript
Rmarkdown manuscript
davemcg/SetOperationsInR
davemcg/seurat-wrappers
Community-provided extensions to Seurat
davemcg/sowden_optic_cup_RNA