gene
There are 204 repositories under gene topic.
volcano-sh/volcano
A Cloud Native Batch System (Project under CNCF)
Gaius-Augustus/Augustus
Genome annotation with AUGUSTUS
showteeth/ggcoverage
Visualize and annotate genomic coverage with ggplot2
Genetalks/gtz
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
cmap/cmapPy
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
biothings/mygene.info
MyGene.info: A BioThings API for gene annotations
OpenGene/GeneFuse
Gene fusion detection and visualization
saketkc/gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
junjunlab/transPlotR
An elegant package to visualize gene structures
monarch-initiative/biolink-api
API for linked biological knowledge
sigven/gvanno
Generic human DNA variant annotation pipeline
GangLiLab/genekitr
🧬 Gene analysis toolkit based on R
j-andrews7/Genotify
A minimal desktop app for easy and convenient gene annotation and lookup.
dputhier/pygtftk
A python package and a set of shell commands to handle GTF files
pinellolab/haystack_bio
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
leekgroup/recount
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
LinkageIO/Camoco
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
sestaton/HMMER2GO
Annotate DNA sequences for Gene Ontology terms
sk-sahu/sig-bio-shiny
A standalone interactive application for detecting biological significance on a set of genes
slowkow/snpsea
:bar_chart: Identify cell types and pathways affected by genetic risk loci.
LieberInstitute/recount3
Explore and download data from the recount3 project
GSEA-MSigDB/GSEA.jl
Julia implementation of the next generation GSEA 🏔️
sasou/gene
Grace, fastest, flexibility, simple PHP extension framework！优雅、极速、灵活、简单的PHP扩展框架！
trendscenter/fit
Fusion ICA Toolbox (MATLAB)
ziwang-com/AGM
AGM阿格姆：AI基因图谱模型，从token-weight权重微粒角度，探索AI模型，GPT\LLM大模型的内在运作机制。
OpenGene/FusionDirect.jl
(No maintenance) Detect gene fusion directly from raw fastq files
Kumquatum/GWENA
Gene Co-expression Network analysis pipeline
sdomanskyi/DigitalCellSorter
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
Vivianstats/scLink
Inferring gene co-expression networks from single cell gene expression data
YaoLab-Bioinfo/funRiceGenes
The knowledge of cloned rice genes lost in the information of rice functional genomics studies
genescf/GeneSCF
Gene Set Clustering based on Functional annotation
aertslab/GRNBoost
Scalable inference of gene regulatory networks using Apache Spark and XGBoost
Zenleaf/entrez-rs
A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.
camilogarciabotero/GeneFinder.jl
A Gene Finder framework for Julia.
jkobject/scPRINT
single cell foundation model for Gene network inference and more
guokai8/bioAnno
Build Annotation package by using information from KEGG, NCBI, Ensembl