OpenGene/GeneFuse

Issues

• while running Stuck

  #30 opened 4 years ago by hulai-hulai
  10

• Multiple runs show different results.

  #44 opened 5 months ago by Crispy13
  0

• Maybe a typo in the source code, `abs(left.startGP.position) < abs(left.startGP.position)`?

  #43 opened 5 months ago by Crispy13
  0

• IGH-BCL2 is not detected but bam is supported

  #42 opened a year ago by swxzh621
  0

• different gene set gives different results for same fusion

  #41 opened a year ago by mhanbioinfo
  0

• the data size of raw data effected fusion result

  #40 opened a year ago by Tina610
  0

• JSON output corrupted due to a not escaped double-quotes character

  #39 opened 2 years ago by FrancescaMiccolis
  1

• how to filter fusion result

  #38 opened 2 years ago by summerghw
  0

• GOPC_ENST00000052569.6 location

  #37 opened 2 years ago by iamwjy1
  0

• tmprss-erg

  #36 opened 2 years ago by IlyIla
  0

• fusion only option

  #12 opened 2 years ago by foxchase
  1

• calculate genefuse fusion freq

  #35 opened 3 years ago by asmlgkj
  0

• No fusion found using tests data

  #16 opened 5 years ago by chizhenfen
  20

• GeneFuse on RNA-seq

  #34 opened 3 years ago by deb0612
  0

• Looking for "Encompassing Reads" in the output.

  #21 opened 3 years ago by chatchawit
  0

• How to get VAF info from genefuse results?

  #33 opened 3 years ago by ZehangJiang
  0

• Can not get the fusions with the testdata

  #31 opened 4 years ago by kingyang728
  1

• GeneFuse ignores fusions in TCF3

  #27 opened 4 years ago by nvolkovaGEL
  3

• std::bad_alloc

  #32 opened 4 years ago by Xiaohuaniu0032
  0

• Fusion-making .py script does not take into account gene orientation

  #26 opened 4 years ago by nvolkovaGEL
  8

• gen_fusion_file.jl is out of date

  #22 opened 4 years ago by ZKai0801
  2

• make: *** No rule to make target 'install'. Stop.

  #20 opened 5 years ago by jrhaulung
  2

• primary transcripts used in fusion.csv

  #19 opened 5 years ago by zhengxinchang
  1

• How to use GeneFuse to detect fusion for nanopore sequencing fastq?

  #18 opened 5 years ago by pepenglp
  1

• gen_fusion_file.jl

  #17 opened 5 years ago by gerbarinov
  2

• error when creating fusion.csv file

  #14 opened 6 years ago by ericavalentini
  3

• the gen_fusion_file.jl script does not work because OpenGene can not be installed

  #15 opened 6 years ago by yahiaBioinfo
  4

• 可否用gtf文件产生融合基因列表的csv文件？

  #13 opened 6 years ago by wangshun1121
  0

• how to see the version of genefuse?

  #11 opened 6 years ago by ShannonDaddy
  1

• What is the minimum required read length?

  #10 opened 6 years ago by billzt
  2

• No fusion generated using demo fastq files

  #9 opened 6 years ago by foxchase
  4

• No fusion found in tests data

  #8 opened 6 years ago by shikharoy123
  1

• Sort the reported fusions by importance

  #7 opened 6 years ago by sfchen
  0

• Support cross pair

  #6 opened 6 years ago by sfchen
  0

• Whether the software supports fastq data from both DNAseq and RNAseq or not?

  #5 opened 7 years ago by xiezhan
  1

• Support BAM input

  #4 opened 7 years ago by sfchen
  0

• get stuck if no read is presented in the fastq file

  #3 opened 7 years ago by sfchen
  1

• k-mer hit will miss when the fusion mates are in different strands

  #2 opened 7 years ago by sfchen
  1

• gz is not yet supported for reference file <-r>

  #1 opened 7 years ago by sfchen
  0