mhanbioinfo

Pinned Repositories

cfMeDIP-seq-analysis-pipeline
Post-processing pipeline for next-generation circulating methylome data generated by cfMeDIP-seq
Language:R0 0 00
DAPPER_LMS
CIBERSORT and Gene-Set Enrichment Analysis of DAPPER Leiomyosarcoma Cohort
Language:R00
FAM72_paralog_expression
testing RNAseq pipelines that accurately assesses expression of FAM72 paralogs
0 1 00
fragmentomicsBEDPE
Fragmentomics R package based on DELPHI scripts
Language:R0 1 00
Griffin
A flexible framework for nucleosome profiling of cell-free DNA
Language:Python00
IRIS_scmultiomics
IRIS single cell multiomics analysis
00
LIQUORICE
A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies
Language:Python00
make_toy_fastqs
Make toy fastqs with hg38 sequence to avoid privacy issues
Language:Shell0 1 00
MeDEStrandBEDPE
R package MeDEStrand
Language:R0 0 00
MEDIPsBEDPE
MEDIPS - MEthylated DNA ImmunoPrecipitation Sequencing analysis
Language:R0 0 00

mhanbioinfo's Repositories

mhanbioinfo/cfMeDIP-seq-analysis-pipeline
Post-processing pipeline for next-generation circulating methylome data generated by cfMeDIP-seq
Language:R0 0 00
mhanbioinfo/DAPPER_LMS
CIBERSORT and Gene-Set Enrichment Analysis of DAPPER Leiomyosarcoma Cohort
Language:R00
mhanbioinfo/FAM72_paralog_expression
testing RNAseq pipelines that accurately assesses expression of FAM72 paralogs
0 1 00
mhanbioinfo/fragmentomicsBEDPE
Fragmentomics R package based on DELPHI scripts
Language:R0 1 00
mhanbioinfo/Griffin
A flexible framework for nucleosome profiling of cell-free DNA
Language:Python00
mhanbioinfo/IRIS_scmultiomics
IRIS single cell multiomics analysis
00
mhanbioinfo/LIQUORICE
A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies
Language:Python00
mhanbioinfo/make_toy_fastqs
Make toy fastqs with hg38 sequence to avoid privacy issues
Language:Shell0 1 00
mhanbioinfo/MeDEStrandBEDPE
R package MeDEStrand
Language:R0 0 00
mhanbioinfo/MEDIPsBEDPE
MEDIPS - MEthylated DNA ImmunoPrecipitation Sequencing analysis
Language:R0 0 00
mhanbioinfo/PLBR_fragmentomicsBEDPE
Fragmentomics pipeline accepting BAM or BEDPE as input
Language:R0 1 00
mhanbioinfo/SICILIAN
modified version of SICILIAN originally by salzmanlab
Language:Python00
mhanbioinfo/MedRemix_BEDPE9
stand alone MedRemix with BEDPE9 input
Language:R1 0
mhanbioinfo/survminer_ggadjustedcurves
Survival Analysis and Visualization (ggadjustedcurves_fix)
Language:R0 0
mhanbioinfo/VIGEX_cibersort_survival
INSPIRE cohort VIGEX signature correlation with CIBERSORT and survival analysis