cancer
There are 671 repositories under cancer topic.
BMIRDS/deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
tariqdaouda/pyGeno
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
seandavi/awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
sigven/pcgr
Personal Cancer Genome Reporter (PCGR)
suhrig/arriba
Fast and accurate gene fusion detection from RNA-Seq data
shobhitsrivastava-ds/ML-MT-WebApp
This project is all about a Machine Learning based Medical Test web app which makes predictions about various diseases using the concept of machine learning.
CBICA/CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
kritikaparmar-programmer/HealthCheck
Health Check ✔ is a Machine Learning Web Application made using Flask that can predict mainly three diseases i.e. Diabetes, Heart Disease, and Cancer.
greenelab/tybalt
Training and evaluating a variational autoencoder for pan-cancer gene expression data
keller-mark/awesome-biological-visualizations
A list of web-based interactive biological data visualizations.
marakeby/pnet_prostate_paper
P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
OpenGene/MutScan
Detect and visualize target mutations by scanning FastQ files directly
SciLifeLab/Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
greenelab/pancancer
Building classifiers using cancer transcriptomes across 33 different cancer-types
OpenGene/GeneFuse
Gene fusion detection and visualization
AIM-Harvard/SlicerRadiomics
A Slicer extension to provide a GUI around pyradiomics
ramhiser/datamicroarray
A collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models.
cognoma/cognoma
Putting machine learning in the hands of cancer biologists
BioDynaMo/biodynamo
BioDynaMo is a high-performance and modular, agent-based simulation platform.
Bioconductor/GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
PortPy-Project/PortPy
Opensource radiation treatment planning system in Python [AAPM'23]
FeTS-AI/Front-End
Federated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/
yifengtao/genome-transformer
Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
kirbyju/TCIA_Notebooks
Notebooks for working with The Cancer Imaging Archive datasets
luisdrita/HyperFoods
It was built a web application as a step forward in building a 3D recommendation system.
murphycj/AGFusion
Python package to annotate and visualize gene fusions.
sigven/cpsr
Cancer Predisposition Sequencing Reporter (CPSR)
griffithlab/civic-client
Web client for CIViC: Clinical Interpretations of Variants in Cancer
albinsjolin/cancer-whitepaper
Cancer Whitepaper
AmpliconSuite/AmpliconSuite-pipeline
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
KarchinLab/2020plus
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
sigven/oncoEnrichR
Cancer-dedicated gene set interpretation
CRI-iAtlas/shiny-iatlas
An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
ding-lab/hotspot3d
3D hotspot mutation proximity analysis tool